RNA id: TU1974561


Basic Information

Item Value
RNA id TU1974561
length 891
lncRNA type read_through
GC content 0.35
exon number 3
gene id G1723600
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28340183 ~ 28345660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGAACTCCGATTTTTATTTTAtgaacaacaaatcaatacaggaaGTACATGTGGGAACacaagtgtatatataaataatatacaaagGACAATTGGGCTAGGGGGTACAACatcacattacacaaggaccttaagggacatacacTTATTATTccaacagcttttttgttagagtatttaattgtcttaaaatacagttgaaTTTATTTTTGTAAGTTAAGAAaatgtggtgttttgtttgtaaatttacatttgtgaatatgaaataTGGCCTaaagaataatgaaatgaatTACAAAAATGGTTTCAGCTTATTTGTATCGtaggtaaagaatccaagcagtacatctcttCACAATAGTGTAAaccttcataaatgtgttcaattataaatctactgatgtcttgccacagttatCTTGCATGAATACAATGCCGAAAAgtatgcaacactgtttctgggtggtcattacaaaaggggTCATTTGAgttgttttccttaaaCCAAATTCAACTTCATACCCCCTGGAAAGAGACACATtttagtgtttaaaaaaaaacatgttaattAGACACAACATGTAATATGGTAAGAAGCAACACTACCATTTGGGGAAGAGTACCTGAAAGTAGACTGACCACCAGTCCAACAGCCAGTGTTGTAAGTGTCCCAATAGGACTGAAGTAGAGATAGGACAGGGAGTACCAGTTATCAGCCAGGAAGGGTCTGCAGAGGAGACAAACATAGTGGCATCCAACAGTTATAACGTTGCATATATTGTTTAACGCTCATGCAGTTTGCTATTCTAACATGACAAAATGATTCCCGTTCGACAGTACATTTCTAACTGAATATTTGTTTTAACTGTGCCCATGTCAATATACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974521 lncRNA upstream 63509 28276312 ~ 28276674 (+) True G1723568
TU1974519 lncRNA upstream 65549 28274371 ~ 28274634 (+) True G1723566
TU1974501 lncRNA upstream 73191 28266593 ~ 28266992 (+) True G1723558
TU1973749 lncRNA upstream 82982 28254592 ~ 28257201 (+) True LOC118942914
TU1973743 lncRNA upstream 96686 28243290 ~ 28243497 (+) True G1722863
TU1974571 lncRNA downstream 58292 28403952 ~ 28406128 (+) True G1723608
TU1974763 lncRNA downstream 134380 28480040 ~ 28480313 (+) True G1723764
TU1974765 lncRNA downstream 134961 28480621 ~ 28484397 (+) True G1723765
TU1974790 lncRNA downstream 175101 28520761 ~ 28521050 (+) True G1723790
TU1974791 lncRNA downstream 175413 28521073 ~ 28521505 (+) True G1723791
XM_036957539.1 mRNA upstream 4259 28311018 ~ 28335924 (+) False LOC110501048
XM_036957540.1 mRNA upstream 4259 28311018 ~ 28335924 (+) False LOC110501048
XM_036957542.1 mRNA upstream 4259 28311018 ~ 28335924 (+) False LOC110501048
XM_036957543.1 mRNA upstream 4259 28311018 ~ 28335924 (+) False LOC110501048
XM_036957541.1 mRNA upstream 4259 28311019 ~ 28335924 (+) False LOC110501048
XM_036957546.1 mRNA downstream 6291 28351951 ~ 28376045 (+) True utp20
XM_036957548.1 mRNA downstream 34162 28379822 ~ 28390596 (+) False LOC110500185
XM_021577393.2 mRNA downstream 35466 28381126 ~ 28390596 (+) False LOC110500185
XM_036957547.1 mRNA downstream 35466 28381126 ~ 28390596 (+) True LOC110500185
XM_036957570.1 mRNA downstream 279102 28624762 ~ 28635643 (+) False LOC110500191
TU1974515 other upstream 15566 28322520 ~ 28324617 (+) True LOC110501048
TU1972909 other upstream 1518248 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 2009090 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 2298340 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2703594 25636335 ~ 25636589 (+) True G1720853
TU1975302 other downstream 867159 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 912600 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 913001 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 913001 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1544626 29890286 ~ 29891957 (+) True G1725312

Expression Profile