RNA id: TU1974571


Basic Information

Item Value
RNA id TU1974571
length 2177
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1723608
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28403952 ~ 28406128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGAAATGTAGGATTTACATGGTTTAAtatgcaataaaaatgatttGAAGATACCATACATTTATATATTGCTGTCTGAATGTCTAATGTTTTTTATTGAGTTGTCGAGTAGTGTTGATATTGTGCAAACCACGTTCAGTGCTTCATCTTTGTGCCCCGTCTACTATACACTCTCCAGGTCTAGGAAAAGTAGCTAGTAACATTCATCATTTTCTCCATAGCTTACTGTATGTCCAGTTGGCCTATGTTCAACTTCAATGGTCTTTGAACCATCTGATAAGTTTAAAGAAACCTTCATATACATGAGCAATACATATGGTGGGGGAAAATAGACAGAGCGAACCACAGTGTTACAACATACAGAATACTCCTGATATCCTCATTATTGAGGAGACATTGTGACTGCTAACTGTGCCATCCGCTAAACAAATGTCGTTTGAACGCGTTCAATTGTgaaactgactagatatcccctttcCCGTACTCTCGCCCCTGGGCTCCAAAGCCAGTTTGCTCTCCCAAACTAATGCCTAGGGTTTTAGCTCTGTGGGTTAAACACAGTCTCTGGCTGGTTACACAaaactcctcccctctccttcatctGCTTCATATGATGTCTGAGAAGCCTAGTGCGGTCTTTGGCAGTTTGTTACATGGCTTCCAGTTGCAATAGATGTAGGGAACGGAGCAGATAGGACAGCATTCACCAGAATAACACAAAAGGATGACAAAACCCAATGTTTTTGAAACATTACTGTAGTTAGCAACCACAGGTCTGGTCAGAGATCCTGTAGAAATAGAATGTTCAGCCTAAAGCCAGGTTGAGGTGTGTGAATTCATCCCATTGCCACGCCTCTGAGCTGTGACTGGACATGTTATATAGATGGTTAAAAGTTGCTGGGTGGTGGTTTGAGAAAAGCTCCAAATTGGTATTTCTAGGTTAGCATACATAGCATCATGGTTGAATACAGTACAGCATAAACTGCCAACTACCTCTACTATTACTACAACTACAgtgctactagtactactattcTATAGCGAAATCTGTCTACACGCCGATCCAGCATGGTTACTTCCATACACAGGATGTAGAAAACAAGAGGCAATCTTGGATAGAGATCTACTTTCAACATCATTATTTAACCCAGTGGGGGTTAACAGTCGATCACAACTAGTATTGGAATGCATTGGTCAGTTTGTGCTTGTAAATCAGGAGGTTGATTGGTTCCTTCAGAGAAACAGGTTGACCAAAATTACTttccaagtggcaccctattccctatgtagtgcactactttggggaatatggtgtcatttgggacgtgaCTGATGTTTCAACATAGATACTGTAGAACCAAGGAAGGATGATAACGGTACAAACACTGTCAGCTTTTACAATGTTTGGAAATCTCTTATCCTGTAAAACACATTCAAAGTGCAATAgaaacatttatatatatatacacaccgcaGGGTGTGTGTGAGCAAAGTGCATTTTAAAGAAATTCTGTAGAATATAAAAAACAAGCTACGATcttggggaggggtggggacAAGCAATGAATCCAATCCAAACAGAGCAGAAAAGGACTCAAACAATCTGGGTTTGCGAAAGCTAATACCTTTTTTTACATGCATTTCAAATACACAGTTATGGCTTTGTCCTCTGCCGCCTTGGCGttcactacatactgtatggtacCATTAATGATTGTACAGCTAAGCTATACATTCAGCAAAACCCAACAGTTGTCCACCTCTTGAACCCAACAAAATTATCATCACTGGTCGCAACATAAAAGTATGTTTCAACAACCCCCAAAACACCATAGACAAATACATGATGAATAATGACTAATAGCTAGCGCGGTAGTAAAGATGGCATGTCGCTCTTTTCTCCCACAGACCCTCAAGTCAGACAGTCTGTTATACGTCTTTGTGAGTGTCGTCCTTCTCTTCCTTCAGTGAGAGGCACTGCTCTGGCTCTGCCCCGCAGAGTCCTGTgatggggttagaggtcagggtgtAGTAGTTCCAGGGTTTATAGAGGACCTGGGGAACAAGGCGGCTGGGCGAGCCAAAGGAGAGGCACTCGTGGGGGGCTGCTGCTGTAGCTGCTCAGGGGGCAGTGAGCTCGGTACTCCCGGATAGCCGACACAATGCTACGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974561 lncRNA upstream 58292 28340183 ~ 28345660 (+) False G1723600
TU1974562 lncRNA upstream 63025 28340183 ~ 28340927 (+) True G1723600
TU1974521 lncRNA upstream 127278 28276312 ~ 28276674 (+) True G1723568
TU1974519 lncRNA upstream 129318 28274371 ~ 28274634 (+) True G1723566
TU1974501 lncRNA upstream 136960 28266593 ~ 28266992 (+) True G1723558
TU1974763 lncRNA downstream 73912 28480040 ~ 28480313 (+) True G1723764
TU1974765 lncRNA downstream 74493 28480621 ~ 28484397 (+) True G1723765
TU1974790 lncRNA downstream 114633 28520761 ~ 28521050 (+) True G1723790
TU1974791 lncRNA downstream 114945 28521073 ~ 28521505 (+) True G1723791
TU1974845 lncRNA downstream 138484 28544612 ~ 28544931 (+) True G1723838
XM_036957548.1 mRNA upstream 13356 28379822 ~ 28390596 (+) False LOC110500185
XM_021577393.2 mRNA upstream 13356 28381126 ~ 28390596 (+) False LOC110500185
XM_036957547.1 mRNA upstream 13356 28381126 ~ 28390596 (+) True LOC110500185
XM_036957546.1 mRNA upstream 27907 28351951 ~ 28376045 (+) True utp20
XM_021577388.2 mRNA upstream 61104 28341423 ~ 28342848 (+) False LOC110500183
XM_036957570.1 mRNA downstream 218634 28624762 ~ 28635643 (+) False LOC110500191
XM_036957561.1 mRNA downstream 218647 28624775 ~ 28784559 (+) False LOC110500191
XM_036957560.1 mRNA downstream 218647 28624775 ~ 28787436 (+) False LOC110500191
XR_005038567.1 mRNA downstream 218647 28624775 ~ 28787436 (+) False LOC110500191
XM_036957553.1 mRNA downstream 218648 28624776 ~ 28787436 (+) False LOC110500191
TU1974550 other upstream 60218 28341501 ~ 28343734 (+) False LOC110500183
TU1974557 other upstream 60218 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 60743 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 60743 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 61105 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 806691 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 852132 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 852533 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 852533 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1484158 29890286 ~ 29891957 (+) True G1725312

Expression Profile