RNA id: TU1974790


Basic Information

Item Value
RNA id TU1974790
length 290
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1723790
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28520761 ~ 28521050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggaaggccaggtcttggtagatttgaagtggtctgatactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974765 lncRNA upstream 36364 28480621 ~ 28484397 (+) True G1723765
TU1974763 lncRNA upstream 40448 28480040 ~ 28480313 (+) True G1723764
TU1974571 lncRNA upstream 114633 28403952 ~ 28406128 (+) True G1723608
TU1974561 lncRNA upstream 175101 28340183 ~ 28345660 (+) False G1723600
TU1974562 lncRNA upstream 179834 28340183 ~ 28340927 (+) True G1723600
TU1974791 lncRNA downstream 23 28521073 ~ 28521505 (+) True G1723791
TU1974845 lncRNA downstream 23562 28544612 ~ 28544931 (+) True G1723838
TU1974912 lncRNA downstream 71319 28592369 ~ 28592568 (+) True G1723905
TU1974933 lncRNA downstream 86504 28607554 ~ 28607802 (+) True G1723926
TU1975082 lncRNA downstream 303361 28824411 ~ 28827775 (+) False G1724040
XM_036957548.1 mRNA upstream 130165 28379822 ~ 28390596 (+) False LOC110500185
XM_021577393.2 mRNA upstream 130165 28381126 ~ 28390596 (+) False LOC110500185
XM_036957547.1 mRNA upstream 130165 28381126 ~ 28390596 (+) True LOC110500185
XM_036957546.1 mRNA upstream 144716 28351951 ~ 28376045 (+) True utp20
XM_021577391.2 mRNA upstream 177913 28341472 ~ 28342848 (+) False LOC110500183
XM_036957570.1 mRNA downstream 103712 28624762 ~ 28635643 (+) False LOC110500191
XM_036957561.1 mRNA downstream 103725 28624775 ~ 28784559 (+) False LOC110500191
XM_036957560.1 mRNA downstream 103725 28624775 ~ 28787436 (+) False LOC110500191
XR_005038567.1 mRNA downstream 103725 28624775 ~ 28787436 (+) False LOC110500191
XM_036957553.1 mRNA downstream 103726 28624776 ~ 28787436 (+) False LOC110500191
TU1974557 other upstream 177027 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 177552 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 177552 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 177914 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 691769 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 737210 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 737611 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 737611 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1369236 29890286 ~ 29891957 (+) True G1725312

Expression Profile