RNA id: TU1974933


Basic Information

Item Value
RNA id TU1974933
length 249
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1723926
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28607554 ~ 28607802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AaacaacagagcaaactagaatgctatttggccctaaacagagagtacacagtggcagaatacctgatcactgtgactgacccaaacttaaggaaagctttgactatgtacagactcagtgagcatagctttgctattgagaaagacatggctctcaagagaagacaggctatatgAACACTGCCAAcagaatgaggtggaaactgagctgcaattCCTTACCTCCTGCTAAAtgaatgaccatattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974912 lncRNA upstream 14986 28592369 ~ 28592568 (+) True G1723905
TU1974845 lncRNA upstream 62623 28544612 ~ 28544931 (+) True G1723838
TU1974791 lncRNA upstream 86049 28521073 ~ 28521505 (+) True G1723791
TU1974790 lncRNA upstream 86504 28520761 ~ 28521050 (+) True G1723790
TU1974765 lncRNA upstream 123157 28480621 ~ 28484397 (+) True G1723765
TU1975082 lncRNA downstream 216609 28824411 ~ 28827775 (+) False G1724040
TU1975083 lncRNA downstream 216609 28824411 ~ 28827775 (+) False G1724040
TU1975084 lncRNA downstream 216609 28824411 ~ 28825659 (+) False G1724040
TU1975087 lncRNA downstream 216609 28824411 ~ 28825659 (+) False G1724040
TU1975080 lncRNA downstream 217184 28824986 ~ 28827775 (+) False G1724040
XM_036957548.1 mRNA upstream 216958 28379822 ~ 28390596 (+) False LOC110500185
XM_021577393.2 mRNA upstream 216958 28381126 ~ 28390596 (+) False LOC110500185
XM_036957547.1 mRNA upstream 216958 28381126 ~ 28390596 (+) True LOC110500185
XM_036957546.1 mRNA upstream 231509 28351951 ~ 28376045 (+) True utp20
XM_021577391.2 mRNA upstream 264706 28341472 ~ 28342848 (+) False LOC110500183
XM_036957570.1 mRNA downstream 16960 28624762 ~ 28635643 (+) False LOC110500191
XM_036957561.1 mRNA downstream 16973 28624775 ~ 28784559 (+) False LOC110500191
XM_036957560.1 mRNA downstream 16973 28624775 ~ 28787436 (+) False LOC110500191
XR_005038567.1 mRNA downstream 16973 28624775 ~ 28787436 (+) False LOC110500191
XM_036957553.1 mRNA downstream 16974 28624776 ~ 28787436 (+) False LOC110500191
TU1974557 other upstream 263820 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 264345 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 264345 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 264707 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 605017 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 650458 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 650859 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 650859 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1282484 29890286 ~ 29891957 (+) True G1725312

Expression Profile