RNA id: TU1975082


Basic Information

Item Value
RNA id TU1975082
length 457
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G1724040
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28824411 ~ 28827966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctttctttctctctctctttctctctctctttctctctctctttctctctctttctttctctctctttctttctctctttctctctttctctctctctttctttctctctctctctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctttctctctttctctctctttctttctctctctttctttctctctctctctctttctttctctctctttctttctctctctctctttctctctctctctctttctctctctttctctctctctctttctctctctctctttctctctctttctctctctttctctctctttctttctctctctctctttctctctctctctttctctctctttctctctctctctttctctctctttctttctctctctttctctctctttctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974933 lncRNA upstream 216609 28607554 ~ 28607802 (+) True G1723926
TU1974912 lncRNA upstream 231843 28592369 ~ 28592568 (+) True G1723905
TU1974845 lncRNA upstream 279480 28544612 ~ 28544931 (+) True G1723838
TU1974791 lncRNA upstream 302906 28521073 ~ 28521505 (+) True G1723791
TU1974790 lncRNA upstream 303361 28520761 ~ 28521050 (+) True G1723790
TU1975133 lncRNA downstream 65751 28893526 ~ 28893742 (+) True G1724086
TU1975143 lncRNA downstream 81683 28909458 ~ 28909757 (+) True G1724096
TU1975144 lncRNA downstream 81999 28909774 ~ 28909986 (+) True G1724097
TU1975146 lncRNA downstream 86286 28914061 ~ 28914279 (+) True G1724099
TU1975117 lncRNA downstream 108972 28936747 ~ 28937118 (+) False LOC110501052
XR_005038759.1 mRNA upstream 16462 28807820 ~ 28807949 (+) True LOC118943023
XM_036957574.1 mRNA upstream 16704 28788932 ~ 28807707 (+) False aebp2
XM_036957572.1 mRNA upstream 16704 28788933 ~ 28807707 (+) False aebp2
XM_036957573.1 mRNA upstream 16704 28788933 ~ 28807707 (+) False aebp2
XM_036957575.1 mRNA upstream 16704 28788933 ~ 28807707 (+) True aebp2
XM_036957576.1 mRNA downstream 36234 28864009 ~ 28940590 (+) False LOC110501052
XM_036957577.1 mRNA downstream 36236 28864011 ~ 28940590 (+) False LOC110501052
XR_005038568.1 mRNA downstream 113419 28941194 ~ 28943195 (+) False LOC118942915
XM_036957578.1 mRNA downstream 149607 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 149607 28977382 ~ 29040907 (+) True LOC110501054
TU1974557 other upstream 480677 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 481202 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 481202 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 481564 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 385044 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 430485 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 430886 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 430886 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1062511 29890286 ~ 29891957 (+) True G1725312

Expression Profile