RNA id: TU1975143


Basic Information

Item Value
RNA id TU1975143
length 300
lncRNA type intronic
GC content 0.60
exon number 1
gene id G1724096
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28909458 ~ 28909757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGCTGTGGACGTGCCTTTCCTAAACTAAACCGTTTCCCCCTAACACTTAACACGTCTGCTGGTACGGGTACAGACCggaaacggagaggagagagaacgggaCTGAAAAGAAAGAGAAGTAAAAGGAAAAGAGCtagggcctcccaggtggcgcagtggtccagggcactgcatcgcagcgctagctgtgcccccagagactctgggttcgcgcccaggctctgtcgcagccggccgcgactgggaggtccgtggggcgacgcacaattggcctagcgtcgtccgggttagggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975133 lncRNA upstream 15716 28893526 ~ 28893742 (+) True G1724086
TU1975081 lncRNA upstream 81492 28824986 ~ 28827966 (+) False G1724040
TU1975083 lncRNA upstream 81683 28824411 ~ 28827775 (+) False G1724040
TU1975144 lncRNA downstream 17 28909774 ~ 28909986 (+) True G1724097
TU1975146 lncRNA downstream 4304 28914061 ~ 28914279 (+) True G1724099
TU1975117 lncRNA downstream 26990 28936747 ~ 28937118 (+) False LOC110501052
TU1975116 lncRNA downstream 27650 28937407 ~ 28937770 (+) False LOC110501052
TU1975118 lncRNA downstream 28688 28938445 ~ 28938856 (+) True LOC110501052
XR_005038759.1 mRNA upstream 101509 28807820 ~ 28807949 (+) True LOC118943023
XM_036957574.1 mRNA upstream 101751 28788932 ~ 28807707 (+) False aebp2
XR_005038568.1 mRNA downstream 31437 28941194 ~ 28943195 (+) False LOC118942915
XM_036957578.1 mRNA downstream 67625 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 67625 28977382 ~ 29040907 (+) True LOC110501054
XM_021577402.2 mRNA downstream 170547 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 263842 29173599 ~ 29183951 (+) True LOC110500199
TU1974557 other upstream 565724 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 566249 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 566249 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 566611 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 303062 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 348503 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 348904 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 348904 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 980529 29890286 ~ 29891957 (+) True G1725312

Expression Profile