RNA id: TU1975146


Basic Information

Item Value
RNA id TU1975146
length 219
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1724099
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28914061 ~ 28914279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTACACTGGCAAGATCCCACTTCCACGGACTCGAAAATGAATAACGTGTTGCAGACGCAAAGACATCCCATTGAAGAGCAGTGTCCTGCTGTGAAACTGTCTCCCCGACATGGCTTCCTGTCTGCTTTAATGTCAGATATCAGAGTGGATGCATCTGGCTGCCAAAACATAGAGGCCCCTGTCACAAACAtcttgtttagtgtgtgtgtgacccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975144 lncRNA upstream 4075 28909774 ~ 28909986 (+) True G1724097
TU1975143 lncRNA upstream 4304 28909458 ~ 28909757 (+) True G1724096
TU1975133 lncRNA upstream 20319 28893526 ~ 28893742 (+) True G1724086
TU1975081 lncRNA upstream 86095 28824986 ~ 28827966 (+) False G1724040
TU1975117 lncRNA downstream 22468 28936747 ~ 28937118 (+) False LOC110501052
TU1975116 lncRNA downstream 23128 28937407 ~ 28937770 (+) False LOC110501052
TU1975118 lncRNA downstream 24166 28938445 ~ 28938856 (+) True LOC110501052
TU1975115 lncRNA downstream 26902 28941181 ~ 28943191 (+) True LOC118942915
TU1975162 lncRNA downstream 30709 28944988 ~ 28945273 (+) True G1724115
XR_005038759.1 mRNA upstream 106112 28807820 ~ 28807949 (+) True LOC118943023
XM_036957574.1 mRNA upstream 106354 28788932 ~ 28807707 (+) False aebp2
XR_005038568.1 mRNA downstream 26915 28941194 ~ 28943195 (+) False LOC118942915
XM_036957578.1 mRNA downstream 63103 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 63103 28977382 ~ 29040907 (+) True LOC110501054
XM_021577402.2 mRNA downstream 166025 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 259320 29173599 ~ 29183951 (+) True LOC110500199
TU1974557 other upstream 570327 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 570852 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 570852 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 571214 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 298540 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 343981 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 344382 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 344382 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 976007 29890286 ~ 29891957 (+) True G1725312

Expression Profile