RNA id: TU1975162


Basic Information

Item Value
RNA id TU1975162
length 286
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1724115
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28944988 ~ 28945273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGTCAACCCAGGCCCTGTATCCCCCAGCATCATACCTATTcgccaggcactctcatttgttgacttctgtaactgtaaaagccttggtttcatacaTGTTAACACCAGAAGCCTCCTCCATAAATGTGttatattcactgctttagcacactccgccaaccctgatgtcctagccgtgtctgaatcctggcttaggaaggccaccaaaaattctgaaatttctatctccaactacaacattttccgtcaagatagaactgccaaagggggtggagttgcaatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975115 lncRNA upstream 1797 28941181 ~ 28943191 (+) True LOC118942915
TU1975118 lncRNA upstream 6132 28938445 ~ 28938856 (+) True LOC110501052
TU1975116 lncRNA upstream 7218 28937407 ~ 28937770 (+) False LOC110501052
TU1975117 lncRNA upstream 7870 28936747 ~ 28937118 (+) False LOC110501052
TU1975146 lncRNA upstream 30709 28914061 ~ 28914279 (+) True G1724099
TU1975166 lncRNA downstream 6989 28952262 ~ 28952549 (+) True G1724119
TU1975245 lncRNA downstream 140733 29086006 ~ 29086320 (+) True G1724180
TU1975288 lncRNA downstream 241439 29186712 ~ 29186948 (+) True G1724222
TU1975293 lncRNA downstream 253780 29199053 ~ 29199443 (+) True G1724227
TU1975295 lncRNA downstream 255298 29200571 ~ 29200813 (+) True G1724229
XR_005038568.1 mRNA upstream 1793 28941194 ~ 28943195 (+) False LOC118942915
XM_036957576.1 mRNA upstream 4398 28864009 ~ 28940590 (+) False LOC110501052
XM_036957577.1 mRNA upstream 4398 28864011 ~ 28940590 (+) False LOC110501052
XR_005038759.1 mRNA upstream 137039 28807820 ~ 28807949 (+) True LOC118943023
XM_036957573.1 mRNA upstream 137281 28788933 ~ 28807707 (+) False aebp2
XM_036957578.1 mRNA downstream 32109 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 32109 28977382 ~ 29040907 (+) True LOC110501054
XM_021577402.2 mRNA downstream 135031 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 228326 29173599 ~ 29183951 (+) True LOC110500199
XM_021577409.2 mRNA downstream 243762 29189035 ~ 29194796 (+) True LOC110500200
TU1974557 other upstream 601254 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 601779 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 601779 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 602141 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 267546 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 312987 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 313388 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 313388 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 945013 29890286 ~ 29891957 (+) True G1725312

Expression Profile