RNA id: TU1975166


Basic Information

Item Value
RNA id TU1975166
length 288
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G1724119
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28952262 ~ 28952549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgatatgtaggctacgtgtgactttttaaaaatgtatgtagttctgtccttgagctgttcttgtctaatgatgttctgtattatgtcattctgtattatgtttcatgttttgtgtggaccccaggaagagtagctgctgcttttgcaacagctaatgggggatcctaataaaataccaaatacaaacaaattactgagtaaatgcttatataaatgtgatatttcagttttttatttgttatacatttgcaaaaatgtataaaaacttgtttttgctttgtcatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975162 lncRNA upstream 6989 28944988 ~ 28945273 (+) True G1724115
TU1975115 lncRNA upstream 9071 28941181 ~ 28943191 (+) True LOC118942915
TU1975118 lncRNA upstream 13406 28938445 ~ 28938856 (+) True LOC110501052
TU1975116 lncRNA upstream 14492 28937407 ~ 28937770 (+) False LOC110501052
TU1975117 lncRNA upstream 15144 28936747 ~ 28937118 (+) False LOC110501052
TU1975245 lncRNA downstream 133457 29086006 ~ 29086320 (+) True G1724180
TU1975288 lncRNA downstream 234163 29186712 ~ 29186948 (+) True G1724222
TU1975293 lncRNA downstream 246504 29199053 ~ 29199443 (+) True G1724227
TU1975295 lncRNA downstream 248022 29200571 ~ 29200813 (+) True G1724229
TU1975297 lncRNA downstream 254313 29206862 ~ 29207187 (+) True G1724231
XR_005038568.1 mRNA upstream 9067 28941194 ~ 28943195 (+) False LOC118942915
XM_036957576.1 mRNA upstream 11672 28864009 ~ 28940590 (+) False LOC110501052
XM_036957577.1 mRNA upstream 11672 28864011 ~ 28940590 (+) False LOC110501052
XR_005038759.1 mRNA upstream 144313 28807820 ~ 28807949 (+) True LOC118943023
XM_036957575.1 mRNA upstream 144555 28788933 ~ 28807707 (+) True aebp2
XM_036957578.1 mRNA downstream 24833 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 24833 28977382 ~ 29040907 (+) True LOC110501054
XM_021577402.2 mRNA downstream 127755 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 221050 29173599 ~ 29183951 (+) True LOC110500199
XM_021577409.2 mRNA downstream 236486 29189035 ~ 29194796 (+) True LOC110500200
TU1974557 other upstream 608528 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 609053 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 609053 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 609415 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 260270 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 305711 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 306112 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 306112 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 937737 29890286 ~ 29891957 (+) True G1725312

Expression Profile