RNA id: TU1975329


Basic Information

Item Value
RNA id TU1975329
length 1496
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1724261
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29253339 ~ 29254834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGATTTAATGTAGTTATAAGTAATGTACAGTATGCAGGCTACACAATATCCATACAGTGATTGATTCAATTCAATTCCACCATGGACATACTGTAGCAAGAATATTTGAGTCTTTCCTCATTTATAACCTAAAATAAACATGATTTTACTTACTCATTGTGAGCTATATAGTACATGATTGTTCTGTATTATTAAATACAGTTGGTCAATGATTTCCAAACATCAATTTTTAAAAGAAAAATGATGATTAAGATCACAACTTTACCAGGGACAGAAGGTTCTCCCcaaccacatacagtgccttgtgaaagtattcaccccctaggcatttttccttttctgttgccttacaacctggaatcgaTTTTTGGAgaggttgtatcatttgatttatacaacatgcctactactttgaagatgcaaaatattttttattgtgaaacagacaagaaataagacaaaaaaacggaaaacttgagcgtgcataactattcaccccccagaGTCAATATTTGGTAGAGgcaccatttgcagcaattacagctgcaagtctcttggggtatgtctctataagcgtGGCACATTTAgcaactgggatttttgcccgttcttcaaggcaaaactgctccagcaccttcaagttggatgggttccgctggtgtacagcaatctttaagtcataccacaaatttctcaattggattgaggtctgggctttgactaggccattccaatacatttaaatgtttccccttaaacaacttgagtgttgctttagcattatgcttagggtcgttgtcctgctggaaggtgaacctctgccccagtctcaaatctctggaagactgaaacaggtatcAAGaatcaagaatttccctgtatttagcgccatccatcattccttcaattctgaccagtttcccagtccctgccgatgaaaaacacccccacagcatgatgctgtgtcTCCCACCATGCTGTGTCTcccgccttttggcaaacaccaaacgtgtttgcttatttttttcttcaagcaatggcattttttctggccactcttccgtaaagcccagctctgtgaagtgtacggcttaaagtgatcctatggacagatacttcaatctccactgtggagctttgctgctccttcagggttatctttgatctctttgttgcctctctgattaatgcccttcttGTCTGATCTGTGAgctttggtgggcagccctctcttggcaggtttgttgtggtgccatattctttccattttattAATAATATATTTAATAGTGCTCcctgggatgttcaaagtttcagatatttattTAAAACCCaacactgatctgtacttctccacaacattttccctgacctgtttggacagctccttggtcttcatggtgccgcttgcttggtggtgttgcagactctggggcctttcagaacaggtgtatacagtgccttgcgaaagtattcggcccccttgaactttg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975328 lncRNA upstream 510 29252491 ~ 29252829 (+) True G1724260
TU1975326 lncRNA upstream 1772 29251359 ~ 29251567 (+) True LOC110501056
TU1975323 lncRNA upstream 6274 29246850 ~ 29247065 (+) True G1724255
TU1975320 lncRNA upstream 7835 29245222 ~ 29245504 (+) True G1724252
TU1975314 lncRNA upstream 21274 29231731 ~ 29232065 (+) True G1724246
TU1975330 lncRNA downstream 1944 29256778 ~ 29259865 (+) False G1724262
TU1975959 lncRNA downstream 152826 29407660 ~ 29407860 (+) True G1724841
TU1975969 lncRNA downstream 160237 29415071 ~ 29415398 (+) True G1724851
TU1976019 lncRNA downstream 187002 29441836 ~ 29442042 (+) True G1724901
TU1976022 lncRNA downstream 189704 29444538 ~ 29444754 (+) True G1724904
LOC110501056 mRNA upstream 1430 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 58543 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 69388 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 85068 29080304 ~ 29168271 (+) True cog5
XM_036957579.1 mRNA upstream 212432 28977382 ~ 29040907 (+) True LOC110501054
XR_005038433.1 mRNA downstream 369448 29624282 ~ 29630010 (+) True LOC118942782
XM_021577418.2 mRNA downstream 726050 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 726050 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 726050 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 726050 29980884 ~ 29993056 (+) True LOC110500208
TU1975302 other upstream 39056 29212819 ~ 29214283 (+) True G1724234
TU1974557 other upstream 909605 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 910130 28341501 ~ 28343209 (+) False LOC110500183
TU1975334 other downstream 3426 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 3827 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 3827 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 635452 29890286 ~ 29891957 (+) True G1725312
TU1977415 other downstream 1327168 30582002 ~ 30590636 (+) True G1726209

Expression Profile