RNA id: TU1976019


Basic Information

Item Value
RNA id TU1976019
length 207
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G1724901
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29441836 ~ 29442042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttatgacgaccgtgacagaacaacccaccaaaaaaggaccaagcagcatgctAAAAAGGAGTTGACATCTCGGACCTGGGAGAAAgaagagtggaggacatcctggacctgggaggaggtaatggcaggggacaagaccctgccatggcaGCAGGTGGAGATAGCACAGGAGGAACGGCGTCGATATGAAGGTACACGGCtggca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975969 lncRNA upstream 26438 29415071 ~ 29415398 (+) True G1724851
TU1975959 lncRNA upstream 33976 29407660 ~ 29407860 (+) True G1724841
TU1975330 lncRNA upstream 181971 29256778 ~ 29259865 (+) False G1724262
TU1975329 lncRNA upstream 187002 29253339 ~ 29254834 (+) True G1724261
TU1975328 lncRNA upstream 189007 29252491 ~ 29252829 (+) True G1724260
TU1976022 lncRNA downstream 2496 29444538 ~ 29444754 (+) True G1724904
TU1976039 lncRNA downstream 12416 29454458 ~ 29455192 (+) True G1724921
TU1976041 lncRNA downstream 13824 29455866 ~ 29456067 (+) True G1724923
TU1976059 lncRNA downstream 24910 29466952 ~ 29467167 (+) True G1724941
TU1976083 lncRNA downstream 55776 29497818 ~ 29498899 (+) True G1724965
LOC110501056 mRNA upstream 189927 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 247040 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 257885 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 273565 29080304 ~ 29168271 (+) True cog5
XM_036957579.1 mRNA upstream 400929 28977382 ~ 29040907 (+) True LOC110501054
XR_005038433.1 mRNA downstream 182240 29624282 ~ 29630010 (+) True LOC118942782
XM_021577418.2 mRNA downstream 538842 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 538842 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 538842 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 538842 29980884 ~ 29993056 (+) True LOC110500208
TU1975334 other upstream 181907 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 181907 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 181971 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 227553 29212819 ~ 29214283 (+) True G1724234
TU1974557 other upstream 1098102 28341501 ~ 28343734 (+) True LOC110500183
TU1976442 other downstream 448244 29890286 ~ 29891957 (+) True G1725312
TU1977415 other downstream 1139960 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 1163258 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 1163258 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 1439801 30881843 ~ 30883613 (+) True LOC110500226

Expression Profile