RNA id: TU1976192



Basic Information


Item Value
RNA id TU1976192
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1725070
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29567646 ~ 29567856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgattgaaaacatccgaagatcaaaggtaaacgattaatttgattgcttttctgatttgtgaccaagctacttgatgctaggtgtaaataatgttttgtcgagcgatcgattaACTTacacgcttggattgctttcgctgtaaagcatattttcaaattctgacacgacaggtgcattaacaaaaggctaagctgtgttttgctatatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1976083 lncRNA upstream 68747 29497818 ~ 29498899 (+) True G1724965
TU1976059 lncRNA upstream 100479 29466952 ~ 29467167 (+) True G1724941
TU1976041 lncRNA upstream 111579 29455866 ~ 29456067 (+) True G1724923
TU1976039 lncRNA upstream 112454 29454458 ~ 29455192 (+) True G1724921
TU1976022 lncRNA upstream 122892 29444538 ~ 29444754 (+) True G1724904
TU1976231 lncRNA downstream 48660 29616516 ~ 29616716 (+) True G1725108
TU1976238 lncRNA downstream 64379 29632235 ~ 29632464 (+) True G1725115
TU1976246 lncRNA downstream 78697 29646553 ~ 29646781 (+) True G1725123
TU1976313 lncRNA downstream 85884 29653740 ~ 29654008 (+) True G1725187
TU1976432 lncRNA downstream 314667 29882523 ~ 29882927 (+) True G1725306
LOC110501056 mRNA upstream 315737 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 372850 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 383695 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 399375 29080304 ~ 29168271 (+) True cog5
XM_036957579.1 mRNA upstream 526739 28977382 ~ 29040907 (+) True LOC110501054
XR_005038433.1 mRNA downstream 56426 29624282 ~ 29630010 (+) True LOC118942782
XM_021577418.2 mRNA downstream 413028 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 413028 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 413028 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 413028 29980884 ~ 29993056 (+) True LOC110500208
TU1975334 other upstream 307717 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 307717 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 307781 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 353363 29212819 ~ 29214283 (+) True G1724234
TU1974557 other upstream 1223912 28341501 ~ 28343734 (+) True LOC110500183
TU1976442 other downstream 322430 29890286 ~ 29891957 (+) True G1725312
TU1977415 other downstream 1014146 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 1037444 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 1037444 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 1313987 30881843 ~ 30883613 (+) True LOC110500226

Expression Profile