RNA id: TU1976238



Basic Information


Item Value
RNA id TU1976238
length 230
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1725115
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29632235 ~ 29632464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttcaatgctagcatcagtaattctaaaTGTGGTGTTaccccagctagcatggacactgacagttctgaatctgatgcagccgaagagctactgcccccttactcGGGAAAGCAcggaacaacagacagggacgttggaccatcgaagaggagcaaatatgatgagaactacattgatttggggttcacttatattgggagtagtgcctttcctcagccacagtgtgttat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1976231 lncRNA upstream 15519 29616516 ~ 29616716 (+) True G1725108
TU1976192 lncRNA upstream 64379 29567646 ~ 29567856 (+) True G1725070
TU1976083 lncRNA upstream 133336 29497818 ~ 29498899 (+) True G1724965
TU1976059 lncRNA upstream 165068 29466952 ~ 29467167 (+) True G1724941
TU1976041 lncRNA upstream 176168 29455866 ~ 29456067 (+) True G1724923
TU1976246 lncRNA downstream 14089 29646553 ~ 29646781 (+) True G1725123
TU1976313 lncRNA downstream 21276 29653740 ~ 29654008 (+) True G1725187
TU1976432 lncRNA downstream 250059 29882523 ~ 29882927 (+) True G1725306
TU1976437 lncRNA downstream 252035 29884499 ~ 29884805 (+) True G1725307
TU1976439 lncRNA downstream 254101 29886565 ~ 29886991 (+) True G1725309
XR_005038433.1 mRNA upstream 2225 29624282 ~ 29630010 (+) True LOC118942782
LOC110501056 mRNA upstream 380326 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 437439 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 448284 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 463964 29080304 ~ 29168271 (+) True cog5
XM_021577418.2 mRNA downstream 348420 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 348420 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 348420 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 348420 29980884 ~ 29993056 (+) True LOC110500208
XM_021577425.2 mRNA downstream 360981 29993445 ~ 30002054 (+) True LOC110500209
TU1975334 other upstream 372306 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 372306 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 372370 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 417952 29212819 ~ 29214283 (+) True G1724234
TU1974557 other upstream 1288501 28341501 ~ 28343734 (+) True LOC110500183
TU1976442 other downstream 257822 29890286 ~ 29891957 (+) True G1725312
TU1977415 other downstream 949538 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 972836 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 972836 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 1249379 30881843 ~ 30883613 (+) True LOC110500226

Expression Profile