RNA id: TU1976442


Basic Information

Item Value
RNA id TU1976442
length 1672
RNA type TUCP
GC content 0.62
exon number 1
gene id G1725312
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29890286 ~ 29891957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGCGGCGTGCTGACCGGTGGCGTGGCGTTCCGGTGGCTCCTCTTATGGGACTCCAGGTAGAGTTTCTTGGCGAAGGCCCGGCCGCACACGTCACACGAGTGGAGCGAGAAGTTCTTGGTGACACGCACCTctgtgctactgctgctgctctccTGGTGGGCGTCATGGCGACGTGTGTGGGGCGGCGTCGGGGCAGGGGTGTCGGGGTGTTGTTTGTCGTTCTTACGGGAGACAGATGACCCGGTTTGGGCCTCCTGctgcctctcctgtctctcctggttGCGAGTGaccggagtggaggaggagaggaggtcctGTTTGCGTGTGACTGGGTAGGAGGAGGAGTTGAGGAGCTCCTGTTTGCGTGTGACTGGGGGCGTAGGGGGAGAGGGGGCCGAGTGGCACCCGTTCACCTCCTCCTTGACTGTTGTTCCTCCtctcttgttgttgttggcatTGGGGGCAGAGTTGAGGACCACCTCAGCCGGCCGCTTGACCGCACGCGACTCCAGCTTGGGCACGATCTTGGCCAGGTAGCCCGTCGACTTCTTGTGCACCACCGTCACGTGGCGCAGGACGTCGCGCTTGCGCCGGGACTCGTAGCGGCAGAGCGGGCAGCGGTAGAACTTGATGAAGATGTCCGTGCCGTCCGTGTGCAGCTCGATGTGCTTGGTGAGGTTCTGGCGCGAGCTGAACTGACGTTTGCACAGCTTGCAGAACAGCTGCTTGAAGTCGAACCCCACCGAGAGCTTCTGAGGGGGTCTCCCAAGAGTCCCACTGCCACTACTAGTACCACCGGTGCTGTTGATGGAAGTGGAACGAGTTGATGTCTTGGGGCTGCTCCCACCCTCTTCCTCTTTGATCTTTTGACCTGACTTGGTTGCCACGGTGACGCCCTTCCTGTCCGTGTCCTTCCGGTCCGTGTCGCCAGGCGACGAGGCGGGGCTGGAGTCAGGGTCGTCCCAGGATTCAACCGCCTCCTCCTTCATGCTCAAGCTGTTGCTAGGGGTGCTGTCAGTGTTGGTGGCTGTTTTGCTGTTGTTGGTCACCGTGGATGTGGTTGCGGTCGTGGAGACGGAGCTAACGTTCTTGAGATTGTAGATCTTGTGGACGATGCGCATGTGTCTCTTTAACATGACCTGGGAGCTGTACTTTCTCTTGCAGAGCAGACAGCGGCAGGAGGCCAGGTTGTACAGGGCCGATGCCAGGAGAGAAGGGGCAGGGGGCACCGCGGTGGAGGCTTTGGGGGGCTGAGGGGTGGTAGCCCCCGAGGCTCCTCCGCTCTTCGGGGTGTGACCTCTCGCGGGGGAGGAGCTGGCGCTCTTGCGGGGCGGCGTGGCCTCCAGAGACAGCGGCTGGCCGGGGCGCGTGGCTATGTCCGGCGTGATGGTGTCCCGACGCAGGCCGCGGTGCACCTCGTCAAAATGGCGCCGCACGTTGGCCTTGGTGGCAAAGGACTTGAAGCAGACGGGGCAGGACTTGCCGCTGGGCGTGTGCAAGGGGCGAGACCGACCTTTGACCATGGAGAGGAGGCTGATGGGAACGGTGCGCGTCTCGGTGAACTTCCGGAGCTCCTCCAGCTTGGTCTGGTGCATCTTGCGACAGTGGCGGCGGATGCTGCGGCGAGAGTTGAAGTCCTTACCACACAGGCAGCACGAGATGGTAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976438 lncRNA upstream 2256 29887139 ~ 29888030 (+) True G1725308
TU1976439 lncRNA upstream 3295 29886565 ~ 29886991 (+) True G1725309
TU1976437 lncRNA upstream 5481 29884499 ~ 29884805 (+) True G1725307
TU1976432 lncRNA upstream 7359 29882523 ~ 29882927 (+) True G1725306
TU1976313 lncRNA upstream 236278 29653740 ~ 29654008 (+) True G1725187
TU1976443 lncRNA downstream 99 29892056 ~ 29892403 (+) True G1725313
TU1976444 lncRNA downstream 2525 29894482 ~ 29894725 (+) True G1725314
TU1976445 lncRNA downstream 3179 29895136 ~ 29895342 (+) True G1725315
TU1976446 lncRNA downstream 3566 29895523 ~ 29895869 (+) True G1725316
TU1976448 lncRNA downstream 5440 29897397 ~ 29897788 (+) True G1725318
XR_005038433.1 mRNA upstream 260276 29624282 ~ 29630010 (+) True LOC118942782
LOC110501056 mRNA upstream 638377 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 695490 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 706335 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 722015 29080304 ~ 29168271 (+) True cog5
XM_021577418.2 mRNA downstream 88927 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 88927 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 88927 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 88927 29980884 ~ 29993056 (+) True LOC110500208
XM_021577425.2 mRNA downstream 101488 29993445 ~ 30002054 (+) True LOC110500209
TU1975334 other upstream 630357 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 630357 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 630421 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 676003 29212819 ~ 29214283 (+) True G1724234
TU1974557 other upstream 1546552 28341501 ~ 28343734 (+) True LOC110500183
TU1977415 other downstream 690045 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 713343 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 713343 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 989886 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 1248640 31140597 ~ 31141090 (+) True G1726863

Expression Profile