RNA id: TU1976452



Basic Information


Item Value
RNA id TU1976452
length 235
lncRNA type intronic
GC content 0.36
exon number 1
gene id G1725322
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29908315 ~ 29908549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTACAGCACAAATGTGGTTTATATTCAAACTTTGGCTGGTTAGGCTACCTAGACATTTTTAATTCAAAATTATTGATTGGAATGAATCATCAACACAATAGTGATGACATACTGATGATTAACTCTTCAATTACAAAAGCAAAGGCCTTACATGATGCAACCCGGaataaagcaagctcagccctgtTAGTTTTATTGTCCAATTGCAATTGTTGTCTCTTTGCCTGTGTAAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1976450 lncRNA upstream 5095 29903001 ~ 29903220 (+) True G1725320
TU1976448 lncRNA upstream 10527 29897397 ~ 29897788 (+) True G1725318
TU1976446 lncRNA upstream 12446 29895523 ~ 29895869 (+) True G1725316
TU1976445 lncRNA upstream 12973 29895136 ~ 29895342 (+) True G1725315
TU1976444 lncRNA upstream 13590 29894482 ~ 29894725 (+) True G1725314
TU1976455 lncRNA downstream 5486 29914035 ~ 29916320 (+) True G1725325
TU1976460 lncRNA downstream 15016 29923565 ~ 29923867 (+) True G1725327
TU1976476 lncRNA downstream 24279 29932828 ~ 29933028 (+) True G1725338
TU1976477 lncRNA downstream 24990 29933539 ~ 29933773 (+) True G1725339
TU1976478 lncRNA downstream 25382 29933931 ~ 29934362 (+) True G1725340
XR_005038433.1 mRNA upstream 278305 29624282 ~ 29630010 (+) True LOC118942782
LOC110501056 mRNA upstream 656406 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 713519 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 724364 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 740044 29080304 ~ 29168271 (+) True cog5
XM_021577418.2 mRNA downstream 72335 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 72335 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 72335 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 72335 29980884 ~ 29993056 (+) True LOC110500208
XM_021577425.2 mRNA downstream 84896 29993445 ~ 30002054 (+) True LOC110500209
TU1976442 other upstream 16358 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 648386 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 648386 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 648450 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 694032 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 673453 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 696751 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 696751 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 973294 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 1232048 31140597 ~ 31141090 (+) True G1726863

Expression Profile