RNA id: TU1976455


Basic Information

Item Value
RNA id TU1976455
length 2286
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1725325
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29914035 ~ 29916320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATACACATCTAAATGTGTTGATAACACCATGGGGACAACAGGATAAAATAGTCACCCAGGAGTAGAAAGCACATGATGGACGCCACCACAGACTGATAAAATGAACCAGTGACTATTTCATAGTAAGAGCTCAACAAGAACCTGGTTCTGCTTTATTTACAGTGAATACAAAAATAAGGCCTTACTAACAAAGAGACATCCATGTCCTGGGTTAGTGAGGAGACTGCACTGAACCACTAGTCTACTCAAGTCTGCGTCattctctatagtgcactacttaggcactgTATTTCCCCGATACAGTGCCTTTGGTTTGATCAGGGCACGCATATTAGGgcattggtcaaaagtagtgcactacagggaaCAGCGTGCCATTTCAGACCAACACGTAGGGAAGacctcaattgcatactcctcgtgTCCTCTCTCTTGCCGTCATTATcgaaacccattggaggagaaggtcagaatgggcgggacctctggctttctcatccaacgGGTTTTGAGAAGACGAGGAAAGAGGACACGAGTTCAATTAGACTGCTTATCTGCTGTTCCACACTCAGTAACAAATAGCGAGGAGAGGAGAAGCAAAGTTAACATTCAGGAATAATACCTAGTCAGTCACGTGCCGTTTGCTTACCTAAATGACTGGAGAGGGGCATTGGTGGCTCCAGACCTGACCAATCAGTAGTGCACACATTTTCAGTGATCGAACAGTAACTTGTAATTGATGAGTTATAAACTGATATGTATTCTGTAGGTCTATTACTATTTTGGGACAAGTTACATGCCATCGACATTGACCACTAGCAGAAAGCGAGCATATAGGAGTCATTTGAGTGTGTCGGAGGTCATCCGAGATGGTGAAAAGAGCCAATACTTTCACCTACGAGAACTTCTAGAAATATAGAGTGCTGCAGGTGAGGGCCTAAGGACTTGGAAGAGAGTGCACTGCTGCAGAGGCAGGGTCTGAAGGCAAAACGGCAGGCATAGAAACATTCCCCCACTGTACCTACTTTTCCCAGCCCCTCCCCCTGGACCATGCAGACCTACAGTGTTTGTGATTTCCCTTAGCCATGGAGACACATTCagtaaaattgtaaaaaataaaacatttaaaaataaccTTGTCTGAGATTCAGATAGCCTATACATTTCAAACTCTGGACCTCAATGTCAATTCCAttgcattttttcattgttcccatCTAAAttggggactgatttagacctgggacaccaggtgtgtgcaattaatgatcaggtagaacagaaaaccagcaggctccagacctcatggggtaagagttgagtacccctgccCTACACTGTAGCCTAAAGTACACTGGTTTATAAAGGGGATTGAAGTCACAAGGAATACAGGCCTAGTCTTCATATTTACTGTTGTTGACAAAACACCtttacaaatatatacagtgcctagtgaaagtcgacacaccccttgcacagtcttcGCATTGTGCAGCCTTACAATTCCATCTAAAAGGGGAATACATTAGATGTTTTTATCCTTCCGATCTACAAAACCGTCAACATTTTCAAAGCGAAAGAAAATGAAAGAACATTTTCCAAAttcattacaaataaaataaaataaaaagttgttTTGATTGTGCGTGTCTTCCCACCCCAGAGGTCATACTTGGTGGGAAGCAAATATCTATAGAAATAGAAGTAGATTAACGATCTGGGCATATGAGGAAAAAGTGCAAAAGAGAGTATCTGAAAAAGCCTTATTCTTCCTTCAGGCAACCACTGAACATCCCCATGTATGGAACAGTAGGGGCGCCACCGCTGTTCTGAAAAACACATCTAAATTACCTAAAGTAACTTCCTATCACAAGAACTCTCGAGACAGAAGTCAAATTCCTGTCTGGCAACCACCACATTGCTCTAAACGCCACCTTCGTTTTCAGATCCGGAAAgacaaaggaggagaggaggagaagattagactattgagatgcagcccatgtcAGTGATGTCCCTGTAGAGCATCTATCACTGACAGAACAGAAGAACACACTGCAGTGGAAACCAGAGGTATTAAAAGGACTTGGCTAGTGCCATATGTACATTTCTGTAATGTACATATCAAATCAAGCACGTCTGTCAGAGACCagtggaagagaaagagaagtcATGTTGAAAGGTAGAAACATTGGAAGAAGTGTGAAAAGGGAGAACCGCCGGCAAAAAGGACCCTTAAAAATACAAGTCACCAAGCGGTTAAAACACTTTAGCTCGAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976452 lncRNA upstream 5486 29908315 ~ 29908549 (+) True G1725322
TU1976450 lncRNA upstream 10815 29903001 ~ 29903220 (+) True G1725320
TU1976448 lncRNA upstream 16247 29897397 ~ 29897788 (+) True G1725318
TU1976446 lncRNA upstream 18166 29895523 ~ 29895869 (+) True G1725316
TU1976445 lncRNA upstream 18693 29895136 ~ 29895342 (+) True G1725315
TU1976460 lncRNA downstream 7245 29923565 ~ 29923867 (+) True G1725327
TU1976476 lncRNA downstream 16508 29932828 ~ 29933028 (+) True G1725338
TU1976477 lncRNA downstream 17219 29933539 ~ 29933773 (+) True G1725339
TU1976478 lncRNA downstream 17611 29933931 ~ 29934362 (+) True G1725340
TU1976479 lncRNA downstream 18309 29934629 ~ 29934853 (+) True G1725341
XR_005038433.1 mRNA upstream 284025 29624282 ~ 29630010 (+) True LOC118942782
LOC110501056 mRNA upstream 662126 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 719239 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 730084 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 745764 29080304 ~ 29168271 (+) True cog5
XM_021577418.2 mRNA downstream 64564 29980884 ~ 29993056 (+) False LOC110500208
XM_021577419.2 mRNA downstream 64564 29980884 ~ 29993056 (+) False LOC110500208
XM_021577421.2 mRNA downstream 64564 29980884 ~ 29993056 (+) False LOC110500208
XM_021577422.2 mRNA downstream 64564 29980884 ~ 29993056 (+) True LOC110500208
XM_021577425.2 mRNA downstream 77125 29993445 ~ 30002054 (+) True LOC110500209
TU1976442 other upstream 22078 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 654106 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 654106 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 654170 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 699752 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 665682 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 688980 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 688980 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 965523 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 1224277 31140597 ~ 31141090 (+) True G1726863

Expression Profile