RNA id: TU1976637


Basic Information

Item Value
RNA id TU1976637
length 203
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1725474
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30225970 ~ 30226172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctcaatgggtttgagatccgggctcttcgctggccatggcagaacactgacattcctatcttgcaggaaatcacgcacagaacgagcagtatggctggtggcattgctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgagggtggaggatgtctttcctgtaacgcacagcattgagatttcctgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976627 lncRNA upstream 22363 30201598 ~ 30203607 (+) True G1725464
TU1976595 lncRNA upstream 44319 30143786 ~ 30181651 (+) True G1725440
TU1976574 lncRNA upstream 59454 30164176 ~ 30166516 (+) True LOC110500212
TU1976590 lncRNA upstream 94908 30130753 ~ 30131062 (+) True G1725438
TU1976588 lncRNA upstream 96840 30128864 ~ 30129130 (+) True G1725436
TU1976638 lncRNA downstream 499 30226671 ~ 30226875 (+) True G1725475
TU1976644 lncRNA downstream 20369 30246541 ~ 30246855 (+) True G1725481
TU1977033 lncRNA downstream 70641 30296813 ~ 30297582 (+) True G1725840
TU1977007 lncRNA downstream 185097 30411269 ~ 30411616 (+) True G1725817
TU1977344 lncRNA downstream 268953 30495125 ~ 30495592 (+) True G1726139
XM_036957597.1 mRNA upstream 7194 30169479 ~ 30218776 (+) False LOC110501060
XM_036957598.1 mRNA upstream 7194 30169479 ~ 30218776 (+) False LOC110501060
XM_036957599.1 mRNA upstream 7194 30169479 ~ 30218776 (+) True LOC110501060
XM_021577428.2 mRNA upstream 59318 30139073 ~ 30166652 (+) False LOC110500212
XM_021577429.2 mRNA upstream 59318 30139127 ~ 30166652 (+) False LOC110500212
XM_036957600.1 mRNA downstream 37927 30264099 ~ 30410281 (+) False LOC110500216
XM_036957601.1 mRNA downstream 37927 30264099 ~ 30410281 (+) False LOC110500216
XM_036957602.1 mRNA downstream 37927 30264099 ~ 30410281 (+) False LOC110500216
XM_036957603.1 mRNA downstream 37927 30264099 ~ 30410281 (+) False LOC110500216
XM_036957604.1 mRNA downstream 37927 30264099 ~ 30410281 (+) True LOC110500216
TU1976442 other upstream 334013 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 966041 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 966041 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 966105 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 1011687 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 355830 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 379128 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 379128 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 655671 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 914425 31140597 ~ 31141090 (+) True G1726863

Expression Profile