RNA id: TU1976638


Basic Information

Item Value
RNA id TU1976638
length 205
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1725475
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30226671 ~ 30226875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttaggcgtctcacagtacggacattgcaatttatttccctggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacattcacgcagatgagcagggaccctgggcacctttcttttggtgttttccagagtcagtagaaaggcctctttagtgtcctaagtaactgtgaccttaattgcctaccgtctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976637 lncRNA upstream 499 30225970 ~ 30226172 (+) True G1725474
TU1976627 lncRNA upstream 23064 30201598 ~ 30203607 (+) True G1725464
TU1976595 lncRNA upstream 45020 30143786 ~ 30181651 (+) True G1725440
TU1976574 lncRNA upstream 60155 30164176 ~ 30166516 (+) True LOC110500212
TU1976590 lncRNA upstream 95609 30130753 ~ 30131062 (+) True G1725438
TU1976644 lncRNA downstream 19666 30246541 ~ 30246855 (+) True G1725481
TU1977033 lncRNA downstream 69938 30296813 ~ 30297582 (+) True G1725840
TU1977007 lncRNA downstream 184394 30411269 ~ 30411616 (+) True G1725817
TU1977344 lncRNA downstream 268250 30495125 ~ 30495592 (+) True G1726139
TU1977346 lncRNA downstream 270202 30497077 ~ 30497309 (+) True G1726141
XM_036957597.1 mRNA upstream 7895 30169479 ~ 30218776 (+) False LOC110501060
XM_036957598.1 mRNA upstream 7895 30169479 ~ 30218776 (+) False LOC110501060
XM_036957599.1 mRNA upstream 7895 30169479 ~ 30218776 (+) True LOC110501060
XM_021577428.2 mRNA upstream 60019 30139073 ~ 30166652 (+) False LOC110500212
XM_036957600.1 mRNA downstream 37224 30264099 ~ 30410281 (+) False LOC110500216
XM_036957601.1 mRNA downstream 37224 30264099 ~ 30410281 (+) False LOC110500216
XM_036957602.1 mRNA downstream 37224 30264099 ~ 30410281 (+) False LOC110500216
XM_036957603.1 mRNA downstream 37224 30264099 ~ 30410281 (+) False LOC110500216
XM_036957604.1 mRNA downstream 37224 30264099 ~ 30410281 (+) True LOC110500216
TU1976442 other upstream 334714 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 966742 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 966742 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 966806 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 1012388 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 355127 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 378425 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 378425 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 654968 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 913722 31140597 ~ 31141090 (+) True G1726863

Expression Profile