RNA id: TU1976644


Basic Information

Item Value
RNA id TU1976644
length 315
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1725481
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30246541 ~ 30246855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggtatgcATGTTGTGTTagtcaaatgatacaacccccccaaaaatccattttaattccagtatgtatggcaacaaaatatgaaaaataccaagggggtggtgaatactttctgaaaccactgtattttgggagtttctcccatttatctctgcagatcctctcaagctgtcaggttggatggggagcgttgctgcacagctattttcaggcctctccagagatgtttgatcaggttcaagtccgggctctggctgggccactcaaggacattcagggactagtcccgaagcccctcctgcattgtcttgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976638 lncRNA upstream 19666 30226671 ~ 30226875 (+) True G1725475
TU1976637 lncRNA upstream 20369 30225970 ~ 30226172 (+) True G1725474
TU1976627 lncRNA upstream 42934 30201598 ~ 30203607 (+) True G1725464
TU1976595 lncRNA upstream 64890 30143786 ~ 30181651 (+) True G1725440
TU1976574 lncRNA upstream 80025 30164176 ~ 30166516 (+) True LOC110500212
TU1977033 lncRNA downstream 49958 30296813 ~ 30297582 (+) True G1725840
TU1977007 lncRNA downstream 164414 30411269 ~ 30411616 (+) True G1725817
TU1977344 lncRNA downstream 248270 30495125 ~ 30495592 (+) True G1726139
TU1977346 lncRNA downstream 250222 30497077 ~ 30497309 (+) True G1726141
TU1977429 lncRNA downstream 357851 30604706 ~ 30604907 (+) True G1726221
XM_036957597.1 mRNA upstream 27765 30169479 ~ 30218776 (+) False LOC110501060
XM_036957598.1 mRNA upstream 27765 30169479 ~ 30218776 (+) False LOC110501060
XM_036957599.1 mRNA upstream 27765 30169479 ~ 30218776 (+) True LOC110501060
XM_021577428.2 mRNA upstream 79889 30139073 ~ 30166652 (+) False LOC110500212
XM_036957600.1 mRNA downstream 17244 30264099 ~ 30410281 (+) False LOC110500216
XM_036957601.1 mRNA downstream 17244 30264099 ~ 30410281 (+) False LOC110500216
XM_036957602.1 mRNA downstream 17244 30264099 ~ 30410281 (+) False LOC110500216
XM_036957603.1 mRNA downstream 17244 30264099 ~ 30410281 (+) False LOC110500216
XM_036957604.1 mRNA downstream 17244 30264099 ~ 30410281 (+) True LOC110500216
TU1976442 other upstream 354584 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 986612 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 986612 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 986676 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 1032258 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 335147 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 358445 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 358445 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 634988 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 893742 31140597 ~ 31141090 (+) True G1726863

Expression Profile