RNA id: TU1977344


Basic Information

Item Value
RNA id TU1977344
length 468
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1726139
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30495125 ~ 30495592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTcatgaaatatatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaatccagaaaatcacattgtaggatttttaatgaattaatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtacaaaagacacctgtccacaacctcaaacagtcttagttattgtcctgctggaaggtgaatttgtctcccagtgtcttttggaaagcagactgaaccaggtgttGCCTGTGCTTCGCTTCATTCCAttcatttttataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977007 lncRNA upstream 83509 30411269 ~ 30411616 (+) True G1725817
TU1977033 lncRNA upstream 197543 30296813 ~ 30297582 (+) True G1725840
TU1976644 lncRNA upstream 248270 30246541 ~ 30246855 (+) True G1725481
TU1976638 lncRNA upstream 268250 30226671 ~ 30226875 (+) True G1725475
TU1976637 lncRNA upstream 268953 30225970 ~ 30226172 (+) True G1725474
TU1977346 lncRNA downstream 1485 30497077 ~ 30497309 (+) True G1726141
TU1977429 lncRNA downstream 109114 30604706 ~ 30604907 (+) True G1726221
TU1977441 lncRNA downstream 129188 30624780 ~ 30624980 (+) True G1726232
TU1977530 lncRNA downstream 139622 30635214 ~ 30635420 (+) True G1726310
TU1977531 lncRNA downstream 140774 30636366 ~ 30636579 (+) True G1726311
XM_036957600.1 mRNA upstream 84844 30264099 ~ 30410281 (+) False LOC110500216
XM_021578435.2 mRNA downstream 48798 30544390 ~ 30545166 (+) True LOC110500929
XM_021577434.2 mRNA downstream 222988 30718580 ~ 30725274 (+) False LOC110500218
XM_021577435.2 mRNA downstream 223004 30718596 ~ 30725274 (+) False LOC110500218
XM_021577437.2 mRNA downstream 223009 30718601 ~ 30725274 (+) True LOC110500218
XM_036957614.1 mRNA downstream 254418 30750010 ~ 30807982 (+) False LOC110500219
TU1976442 other upstream 603168 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 1235196 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 1235196 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 1235260 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 1280842 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 86410 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 109708 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 109708 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 386251 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 645005 31140597 ~ 31141090 (+) True G1726863

Expression Profile