RNA id: TU1977530


Basic Information

Item Value
RNA id TU1977530
length 207
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1726310
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30635214 ~ 30635420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaatcaaacagactccaacctctccacaatggccaagactagagagctgtgtaaggacatcagggctaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagatgacggtcaatcaccctcggtctgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1977441 lncRNA upstream 10234 30624780 ~ 30624980 (+) True G1726232
TU1977429 lncRNA upstream 30307 30604706 ~ 30604907 (+) True G1726221
TU1977346 lncRNA upstream 137905 30497077 ~ 30497309 (+) True G1726141
TU1977344 lncRNA upstream 139622 30495125 ~ 30495592 (+) True G1726139
TU1977007 lncRNA upstream 223598 30411269 ~ 30411616 (+) True G1725817
TU1977531 lncRNA downstream 946 30636366 ~ 30636579 (+) True G1726311
TU1977552 lncRNA downstream 17030 30652450 ~ 30652811 (+) True G1726330
TU1977565 lncRNA downstream 30230 30665650 ~ 30666102 (+) True G1726343
TU1977575 lncRNA downstream 35903 30671323 ~ 30671545 (+) True G1726353
TU1977775 lncRNA downstream 227168 30862588 ~ 30862794 (+) True G1726524
XM_021578435.2 mRNA upstream 90048 30544390 ~ 30545166 (+) True LOC110500929
XM_036957601.1 mRNA upstream 224933 30264099 ~ 30410281 (+) False LOC110500216
XM_021577434.2 mRNA downstream 83160 30718580 ~ 30725274 (+) False LOC110500218
XM_021577435.2 mRNA downstream 83176 30718596 ~ 30725274 (+) False LOC110500218
XM_021577437.2 mRNA downstream 83181 30718601 ~ 30725274 (+) True LOC110500218
XM_036957614.1 mRNA downstream 114590 30750010 ~ 30807982 (+) False LOC110500219
XM_036957615.1 mRNA downstream 114590 30750010 ~ 30807982 (+) False LOC110500219
TU1977430 other upstream 23853 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 23853 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 44578 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 743257 29890286 ~ 29891957 (+) True G1725312
TU1975333 other upstream 1375285 29258661 ~ 29259929 (+) True G1724262
TU1977723 other downstream 246423 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 505177 31140597 ~ 31141090 (+) True G1726863
TU1978432 other downstream 813976 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 872636 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 928715 31564135 ~ 31564594 (+) True G1727220

Expression Profile