RNA id: TU1978141



Basic Information


Item Value
RNA id TU1978141
length 494
RNA type TUCP
GC content 0.48
exon number 1
gene id G1726863
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31140597 ~ 31141090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcttgctgcgggcgattccctgatccacctctacgcagacgacaccattttatatactttcggcccgtcattggacactgtgctatctaacctccaaacaagcttcaatgccatacaacactccttccgtggcctccaactgctcttaaacgctagtaaaaccaaatgcatgcttttcaaccgatcgctgcctgcacccgcatgcccgactagcatcaccaccctggatggttccgacctagaatatgtggacatctataagtacctaggtgtctggctagactgcaaactctccttccagactcatatcaaacatctccaatcgaaaatcaaatcaagagttggctttctattccgcaacaaagcctccttcactcacgccgccaagcttaccctagtaaaactgactatcctaccgatcctcgacttcggcgatgtcatctacaaaatggcttccaacactctactcagcaaactggatgcagtctatcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1978118 lncRNA upstream 24044 31116255 ~ 31116553 (+) True G1726840
TU1978075 lncRNA upstream 63753 31076628 ~ 31076844 (+) True G1726797
TU1977854 lncRNA upstream 104362 31035810 ~ 31036235 (+) True G1726597
TU1977846 lncRNA upstream 115084 31025201 ~ 31025513 (+) True G1726589
TU1977844 lncRNA upstream 119379 31020970 ~ 31021218 (+) True G1726587
TU1978223 lncRNA downstream 87891 31228981 ~ 31229201 (+) True G1726945
TU1978236 lncRNA downstream 107007 31248097 ~ 31250779 (+) True G1726957
TU1978334 lncRNA downstream 142745 31283835 ~ 31284089 (+) True G1727049
TU1978335 lncRNA downstream 143003 31284093 ~ 31284504 (+) True G1727050
TU1978340 lncRNA downstream 146887 31287977 ~ 31288180 (+) True G1727055
trnaa-ugc-149 mRNA upstream 36385 31104142 ~ 31104212 (+) True trnaa-ugc-149
XM_021577479.2 mRNA upstream 74946 31046030 ~ 31065651 (+) False LOC110500235
XM_021577480.2 mRNA upstream 74946 31046030 ~ 31065651 (+) False LOC110500235
XM_021577481.2 mRNA upstream 74946 31046030 ~ 31065651 (+) False LOC110500235
XM_021577483.2 mRNA upstream 74946 31046030 ~ 31065651 (+) False LOC110500235
XM_021577488.2 mRNA downstream 286737 31427827 ~ 31436839 (+) False LOC110500239
XM_036957653.1 mRNA downstream 286737 31427827 ~ 31436839 (+) True LOC110500239
XM_036957654.1 mRNA downstream 323162 31464252 ~ 31465847 (+) True LOC118942919
XM_021577489.2 mRNA downstream 352372 31493462 ~ 31497830 (+) False LOC110500240
XM_021577490.2 mRNA downstream 352372 31493462 ~ 31497830 (+) True LOC110500240
TU1977723 other upstream 256984 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 529236 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 529236 30605300 ~ 30611361 (+) True G1726222
TU1977415 other upstream 549961 30582002 ~ 30590636 (+) True G1726209
TU1976442 other upstream 1248640 29890286 ~ 29891957 (+) True G1725312
TU1978432 other downstream 308306 31449396 ~ 31450117 (+) True G1727146
TU1978468 other downstream 366966 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 423045 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 973646 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 994865 32135955 ~ 32136696 (+) False LOC110501063

Expression Profile