RNA id: TU1978433


Basic Information

Item Value
RNA id TU1978433
length 239
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1727147
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31456169 ~ 31456407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtagtaagacatgaataaaagcaacagataccattaataagaaggggctagaagcatcttatatggtgagctaccgagtggctaggacaggcaagccccatactattgtggaggacttaattcttcctgctactgcggatatggctgggacaatgctgggggaaaaggcccaaaaaactatacagacaatgtcttcatcaaacaacactgtttcacgacgcatcagtgacatggcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1978429 lncRNA upstream 8094 31447849 ~ 31448075 (+) True G1727143
TU1978370 lncRNA upstream 135289 31320279 ~ 31320880 (+) True G1727084
TU1978340 lncRNA upstream 167989 31287977 ~ 31288180 (+) True G1727055
TU1978335 lncRNA upstream 171665 31284093 ~ 31284504 (+) True G1727050
TU1978334 lncRNA upstream 172080 31283835 ~ 31284089 (+) True G1727049
TU1978434 lncRNA downstream 617 31457024 ~ 31463251 (+) True G1727148
TU1978441 lncRNA downstream 10778 31467185 ~ 31467721 (+) True G1727154
TU1978443 lncRNA downstream 15112 31471519 ~ 31471810 (+) True G1727156
TU1978445 lncRNA downstream 17488 31473895 ~ 31474128 (+) True G1727158
TU1978452 lncRNA downstream 25596 31482003 ~ 31482283 (+) True G1727165
XM_021577488.2 mRNA upstream 19330 31427827 ~ 31436839 (+) False LOC110500239
XM_036957653.1 mRNA upstream 19330 31427827 ~ 31436839 (+) True LOC110500239
trnaa-ugc-149 mRNA upstream 351957 31104142 ~ 31104212 (+) True trnaa-ugc-149
XM_036957632.1 mRNA upstream 390518 31050290 ~ 31065651 (+) False LOC110500235
XM_036957654.1 mRNA downstream 7845 31464252 ~ 31465847 (+) True LOC118942919
XM_021577489.2 mRNA downstream 37055 31493462 ~ 31497830 (+) False LOC110500240
XM_021577490.2 mRNA downstream 37055 31493462 ~ 31497830 (+) True LOC110500240
XM_021577492.2 mRNA downstream 111988 31568395 ~ 31589029 (+) True tmem168a
XM_021577498.2 mRNA downstream 224533 31680940 ~ 31684896 (+) True LOC110500245
TU1978432 other upstream 6052 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 315079 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 572556 30881843 ~ 30883613 (+) True LOC110500226
TU1977430 other upstream 844808 30605300 ~ 30611361 (+) False G1726222
TU1977431 other upstream 844808 30605300 ~ 30611361 (+) True G1726222
TU1978468 other downstream 51649 31508056 ~ 31508372 (+) True G1727181
TU1978507 other downstream 107728 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 658329 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 679548 32135955 ~ 32136696 (+) False LOC110501063
TU1979380 other downstream 701505 32157912 ~ 32162392 (+) True LOC110500252

Expression Profile