RNA id: TCONS_00004852


Basic Information

Item Value
RNA id TCONS_00004852
length 622
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_002607
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8947228 ~ 8957480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTCTGTGCTGCGGGGTAAGGTGGTTCTGGCTGTGCGTCAGGAGTTTGTGTCTCTGTGTGAGCAGCCGCTAAGCCTCAGGGACGGAGACGAGCTGGCCATCATCCCGCCACTCAGTGGAGGATAAACTAACTCCAGAGGTATGGCTGCCGATGGGGGTCGAGATCTAATAACTCTCACCACTGACAAACTTTTTGCTGACAGAGTGTCTGAATCGGTTACATGTCCTTCCTGTGGTGCTGTTTCTCTGTTCATTGGGACTACCAGAGATAATTTCGAGGGTAAGAAAGTGGTCCGGCTTGAATACGAGGCCTACGCTCCAATGGCAGAGTCTAAACTGAAGAAGATCTGCAGTCACATCAGGACAAAGTGGCCCAGTGTGAGACACATTAACATACAACACCGACTCGGTCTGGTTTCTGTAACCGAAGCGAGTGTTATTATTGGCATCTCATCACCGCACAGAAGTGACTCCCTGGAAGCGCTCAAATATTGCATCGACACACTCAAAGCTACTGTGCCAATCTGGAAAAAGGAAATATACGAGTCCGGGGAGCCTTGCTGGAAGGAGAACAAGGAGTGTTTGTGGGCGGATGGTGGAAAACATcccaaagaaagctga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000110628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006000 lncRNA downstream 88780 8841698 ~ 8858568 (-) True XLOC_002606
TCONS_00005999 lncRNA downstream 88799 8841698 ~ 8858549 (-) False XLOC_002606
TCONS_00005998 lncRNA downstream 289671 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00005997 lncRNA downstream 325805 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00006001 lncRNA upstream 190095 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00006002 lncRNA upstream 234684 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00004863 lncRNA upstream 309260 9264673 ~ 9269249 (-) False XLOC_002614
TCONS_00004864 lncRNA upstream 309260 9264673 ~ 9269711 (-) True XLOC_002614
TCONS_00005750 lncRNA upstream 310640 9266053 ~ 9267711 (-) True XLOC_002615
TCONS_00004847 mRNA downstream 274528 8660654 ~ 8672820 (-) True XLOC_002604
TCONS_00004845 mRNA downstream 512532 8416117 ~ 8434816 (-) True XLOC_002601
TCONS_00004844 mRNA downstream 588952 8298984 ~ 8358396 (-) True XLOC_002600
TCONS_00004843 mRNA downstream 652006 8274075 ~ 8295342 (-) True XLOC_002599
TCONS_00004842 mRNA downstream 652383 8266371 ~ 8294965 (-) False XLOC_002599
TCONS_00004854 mRNA upstream 51161 9006574 ~ 9089545 (-) False XLOC_002608
TCONS_00004857 mRNA upstream 81958 9037371 ~ 9086716 (-) True XLOC_002608
TCONS_00004858 mRNA upstream 149594 9105007 ~ 9115383 (-) True XLOC_002610
TCONS_00004860 mRNA upstream 231238 9186651 ~ 9190831 (-) False XLOC_002613
TCONS_00004861 mRNA upstream 234652 9190065 ~ 9192450 (-) False XLOC_002613
TCONS_00004848 other downstream 269520 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004819 other downstream 987510 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 1054664 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 1055482 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 1435225 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004855 other upstream 61308 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 81945 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 186152 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 579369 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004879 other upstream 1363895 10319308 ~ 10332427 (-) False XLOC_002623

Expression Profile

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