RNA id: TU1978471



Basic Information


Item Value
RNA id TU1978471
length 216
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G1727184
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31512707 ~ 31512922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctccagctcggccttggggcggcaatattctcctggctctgcccagggtcctttcccgtctagaatctcctcccaagtccatctctccaaatagtgcagcctctcccactgctgctgctgctgctcctgctgctgctttttccgttgcccattaccacgccgcttggttctgttgtggtgggtgattctgtaacgacgttcgtctgtacgagagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1978469 lncRNA upstream 3958 31508518 ~ 31508749 (+) True G1727182
TU1978463 lncRNA upstream 10513 31501978 ~ 31502194 (+) True G1727176
TU1978427 lncRNA upstream 12390 31500003 ~ 31500317 (+) True G1727141
TU1978424 lncRNA upstream 20399 31491516 ~ 31492308 (+) True G1727138
TU1978452 lncRNA upstream 30424 31482003 ~ 31482283 (+) True G1727165
TU1978482 lncRNA downstream 10490 31523412 ~ 31523653 (+) True G1727195
TU1978487 lncRNA downstream 15560 31528482 ~ 31528710 (+) True G1727200
TU1978490 lncRNA downstream 19096 31532018 ~ 31532255 (+) True G1727203
TU1978491 lncRNA downstream 20406 31533328 ~ 31533589 (+) True G1727204
TU1978502 lncRNA downstream 39571 31552493 ~ 31552789 (+) True G1727215
XM_021577489.2 mRNA upstream 14877 31493462 ~ 31497830 (+) False LOC110500240
XM_021577490.2 mRNA upstream 14877 31493462 ~ 31497830 (+) True LOC110500240
XM_036957654.1 mRNA upstream 46860 31464252 ~ 31465847 (+) True LOC118942919
XM_021577488.2 mRNA upstream 75868 31427827 ~ 31436839 (+) False LOC110500239
XM_021577492.2 mRNA downstream 55473 31568395 ~ 31589029 (+) True tmem168a
XM_021577498.2 mRNA downstream 168018 31680940 ~ 31684896 (+) True LOC110500245
XM_021577494.2 mRNA downstream 172485 31685407 ~ 31736831 (+) False LOC110500244
XM_021577495.2 mRNA downstream 179364 31692286 ~ 31736831 (+) False LOC110500244
XM_021577496.2 mRNA downstream 182109 31695031 ~ 31736831 (+) False LOC110500244
TU1978468 other upstream 4335 31508056 ~ 31508372 (+) True G1727181
TU1978432 other upstream 62590 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 371617 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 629094 30881843 ~ 30883613 (+) True LOC110500226
TU1977431 other upstream 901346 30605300 ~ 30611361 (+) True G1726222
TU1978507 other downstream 51213 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 601814 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 623033 32135955 ~ 32136696 (+) False LOC110501063
TU1979380 other downstream 644990 32157912 ~ 32162392 (+) True LOC110500252
TU1980944 other downstream 1808531 33321453 ~ 33321761 (+) True G1729465

Expression Profile