RNA id: TU1978490



Basic Information


Item Value
RNA id TU1978490
length 238
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1727203
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31532018 ~ 31532255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATATATGTTGTACACCCCTTGTTTGGTTGATTCATTTCAGAACATGATGTCTCTCAATCCTATCGTTCAGAATTGCTCTAAAAAGTAGCAAGTTGCCAATCCCTTAATTCTGTatggttatggtaatgtggcaggtagcctagtggttagagcattgggccagtaactgaaaggttgctagattgaatccccaagctgacaaggtaaaaatctgttgttctgctgtcattgtaaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1978487 lncRNA upstream 3308 31528482 ~ 31528710 (+) True G1727200
TU1978482 lncRNA upstream 8365 31523412 ~ 31523653 (+) True G1727195
TU1978471 lncRNA upstream 19096 31512707 ~ 31512922 (+) True G1727184
TU1978469 lncRNA upstream 23269 31508518 ~ 31508749 (+) True G1727182
TU1978463 lncRNA upstream 29824 31501978 ~ 31502194 (+) True G1727176
TU1978491 lncRNA downstream 1073 31533328 ~ 31533589 (+) True G1727204
TU1978502 lncRNA downstream 20238 31552493 ~ 31552789 (+) True G1727215
TU1978511 lncRNA downstream 35700 31567955 ~ 31568161 (+) True G1727224
TU1978739 lncRNA downstream 68536 31600791 ~ 31601136 (+) True G1727427
TU1978782 lncRNA downstream 126100 31658355 ~ 31658590 (+) True G1727468
XM_021577489.2 mRNA upstream 34188 31493462 ~ 31497830 (+) False LOC110500240
XM_021577490.2 mRNA upstream 34188 31493462 ~ 31497830 (+) True LOC110500240
XM_036957654.1 mRNA upstream 66171 31464252 ~ 31465847 (+) True LOC118942919
XM_021577488.2 mRNA upstream 95179 31427827 ~ 31436839 (+) False LOC110500239
XM_021577492.2 mRNA downstream 36140 31568395 ~ 31589029 (+) True tmem168a
XM_021577498.2 mRNA downstream 148685 31680940 ~ 31684896 (+) True LOC110500245
XM_021577494.2 mRNA downstream 153152 31685407 ~ 31736831 (+) False LOC110500244
XM_021577495.2 mRNA downstream 160031 31692286 ~ 31736831 (+) False LOC110500244
XM_021577496.2 mRNA downstream 162776 31695031 ~ 31736831 (+) False LOC110500244
TU1978468 other upstream 23646 31508056 ~ 31508372 (+) True G1727181
TU1978432 other upstream 81901 31449396 ~ 31450117 (+) True G1727146
TU1978141 other upstream 390928 31140597 ~ 31141090 (+) True G1726863
TU1977723 other upstream 648405 30881843 ~ 30883613 (+) True LOC110500226
TU1977431 other upstream 920657 30605300 ~ 30611361 (+) True G1726222
TU1978507 other downstream 31880 31564135 ~ 31564594 (+) True G1727220
TU1979347 other downstream 582481 32114736 ~ 32134999 (+) False LOC110501063
TU1979348 other downstream 603700 32135955 ~ 32136696 (+) False LOC110501063
TU1979380 other downstream 625657 32157912 ~ 32162392 (+) True LOC110500252
TU1980944 other downstream 1789198 33321453 ~ 33321761 (+) True G1729465

Expression Profile