RNA id: TU1979405


Basic Information

Item Value
RNA id TU1979405
length 2701
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1728052
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32236321 ~ 32239087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTTGAGAAAAATGGTTTAATTTTCATGTTGAGGGAATCAAAAATATGCATTTCAACAATAAGCATTGTATTATCCACACAAAACGGTATACTAGAAAATACTGTAATTACCTACCAAAGTATTCAGCTTTTTAGCCCTCAGATTATCATACAATTATGTACAACACATACAGGAGATCTAGCATTAAAGGGACACTttgagattttggcaatgaagccctttatctacttccccagagtcagatgaactcatggataccatttttatgactTTATGAAGTTAGTTtagtgagccaatgctaactagtgttagcacaatgactggaagtctaagGTATCTACTAGCATAAtagcagttaccatagacttccagtcattgtgtgaacgctagttagcaattgcgctaacgttagttagcaacttccttccaactgcagacagagacatacaaatggatTCCATGAGTtctgggaagtagataaaggcATTACCAAAATCCTGAAGAATCCCTTTAAAGCTACTGATGCACTCAGTATTAAAAGGAAAGATTTACCCATTTAGAATCTTCTATCGTATTTGTGCATCTCTGAGCAATGTTCTATCGATTCCCAtggtcatttcatgttttcatgtgtatcggAGTGATTCGCCCTTCAAGCAGACAGAAATACAGTCGGTATGAAGAGTTTAGCATaatttttcccactaattggcTTTATTTCAATGACGCAAAACTCATCATatatttctgcctgcttgaacagGGAATCTTTCCTTTAAACAGAATTATGGCTATGTTTACACAGACAGGCCAATTATTAGACTGAGCTTTGTTATCTAAAAGTTAACAGATCCTGTCCTTGTCCCCGTGTAAGAACGGTCAATATTTGGTTACCTTCCTTTGACAGAAACACAGATGTGAGCCTCATGCTTTGATTCTATCTTATCAAAGAATCAAAATAACCACATGCAGCTTCACATAGTGGCAAACACAAAACCCACAATATCCACTGATTATATTGCAAAATCCAATGTTTTGTGTGCTTCTTTCACGCATAAAGCAATCATTTTGAATAAAGTCTTGAGGAAAATGAAATGGCGATCAACATTTGCGCTTTgacactgttgattacattttattttcctcAAGACTTTATTCAAAATGACTGCGTTATGCGTGACACCACACCGGAATCCTGGGAAAACAACACACCAAAATAAATAGCCTTTATTCAGGAAAACTAAAACACACACTTGTTGACTGTCGGGGGATTAATTCAAATTAGTTCTCATTATTTGCAGAGTGAGGAGCTGAACTCTTCTTctcccatcatcatcatcatcattacctcATCCCTGCCGTCCACCACGCCTGGTTCTGGTGCTGTTTGACCACCGCCTGCTTCTCCTGAGGGCTGAAGTGCAGGATGGTCAGTATGGCTGTGAGGGTCTGCTGACGCCCCCTGGTGTCCTGAAGGGTGAGGAACTTGTAGATTACGTTCTTGAGGTACTCCAAGTTGGCCCCCTCCCTGCCCTGGTCCCTGTGCCGTTTGTCCAGCCTGCCGCGGAGCTCAGCCACCTCCTCGTCGTAGCGCTCCCCGTTTGCGATCAGCTTCCCCTGCAGCTGGTGCACGTCCTCCTCTAGCCGGTGCTTCTGCCGCCGCAGCGAGCCGATCTCCACCTCCTTTCTTGCCAGCTGCTCGACGTACAGGAGGAGCGTGGGCTCGTTGGGCCCTGCCAGCCGCAATGCATGGGTGATGATGTCACTCTCCTCCTGCGCCAAGTCATCCATGTTGTTGgcgttgttgctgttgttgctgccGCCGTCCGCGGTCGCTCTGAAGTCCGCCCCCGTTTCTCCTTCGTCGCTGTGGTGGCTTCTGTAACCAGCGAGACTGTAGCCGATAGACTTCAGCTTCTCCAACTCCTGGTCCTTCTCTTGCAGTAGGGCCATGGTGCGGTCCCTCTGCCGGTGCAGTTCCCCCTCCAGCCTGAGGAGGCTCTCTCTGTATTGGGCCTCAGCCCGGTCAAGCTCCTGTTTATGACCCTGCTGCAGCATCCCTTTCCCCTGTTGACACTCCTCCAGCTCCCGGCGGTGCTTGGCCTCCGCCTCGTCGCCATGGATACGCAGGTTGATGTACTTCTCCTTGAGCTCAGCCAGCTGGTCACGGGCCTCCTCCAGCTCTTTGGCAAGGCTAGAGTCTTTAGCGTTCTTGTTCTTCAGCACCACCTGCGCCCGCACCTTGTAGCGCTCAAACTCCTCCTTCAGCTGCCCCAGTTCCTGCTGGTAGTACAGCGCAGAGGCCTTCTCCCCGTCTGACGACTCTCCCCAACTGCCCGTCCCCTGACCCAGCCGCCCCTCCATCTCAGCCATCTTCTCTATCTCCATGGTCTGCTCTGGGTGGTTCCTCTGTGTGGCTAGCAGAAGAAGTCTCTTCACCTTCTCCAGGCGCTCCTTCAGCACGTTCACGTCCAGGTTGGCCTCGTCCATGCTGAGGTCCAGGGGGGAACCGCGGGTGGAAGCGGCGATGGCCAGGGTCTTGTTCTCCGTGTCCAGCTGCAGGATGCGCTCTCTCAGCCAGTGGGCGTTCTGCTGGTCCCTCTGCCGGGCCTTCTCGCAGGCCCCAAGCAGCTCAGACAGCTCAGACACTCGCAACTCCAGGCTGGCCACACGGCCCTCCTCCAGCTGGGATTGCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979404 lncRNA upstream 15766 32197519 ~ 32220621 (+) True G1728051
TU1979345 lncRNA upstream 91501 32143164 ~ 32144886 (+) True LOC110501063
TU1978794 lncRNA upstream 557656 31678478 ~ 31678731 (+) True G1727480
TU1978782 lncRNA upstream 577797 31658355 ~ 31658590 (+) True G1727468
TU1978739 lncRNA upstream 635251 31600791 ~ 31601136 (+) True G1727427
TU1979419 lncRNA downstream 889 32239976 ~ 32240175 (+) True G1728064
TU1979409 lncRNA downstream 2349 32241436 ~ 32243283 (+) True G1728054
TU1979420 lncRNA downstream 4925 32244012 ~ 32244301 (+) True G1728065
TU1979421 lncRNA downstream 5910 32244997 ~ 32245365 (+) True G1728066
TU1979427 lncRNA downstream 22739 32261826 ~ 32266171 (+) True G1728072
XR_005038579.1 mRNA upstream 1646 32231148 ~ 32234741 (+) True LOC110500255
XM_036957661.1 mRNA upstream 18593 32189560 ~ 32217794 (+) True LOC110501065
XM_036957662.1 mRNA upstream 29796 32189542 ~ 32206591 (+) False LOC110501065
XM_021577509.2 mRNA upstream 55784 32168800 ~ 32180603 (+) True LOC110500253
XM_021577508.2 mRNA upstream 73931 32153116 ~ 32162456 (+) False LOC110500252
NM_001160612.2 mRNA downstream 11535 32250622 ~ 32254298 (+) True arf4
NM_001160545.1 mRNA downstream 18393 32257480 ~ 32261475 (+) True vatf
XM_021577515.2 mRNA downstream 70956 32310043 ~ 32343558 (+) True LOC110500258
XM_021577516.2 mRNA downstream 126433 32365520 ~ 32391529 (+) False LOC110500259
XM_021577518.2 mRNA downstream 126434 32365521 ~ 32391528 (+) False LOC110500259
TU1979380 other upstream 73995 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 99691 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 101388 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 671793 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 728015 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 1082366 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1471005 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 3200202 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3802244 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3994035 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile