RNA id: TU1979566


Basic Information

Item Value
RNA id TU1979566
length 3211
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1728191
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32465202 ~ 32468500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgaagctgaggggtggggttaaggtgatgtgggatggactgagagaagctgaggggtggggttaatgtgatgtgggatggactgagagtagctgaggggtggttTAAATTATATTGTTCTATTATGACTGAACAAgatgtataatgtataaatacTATCTATTGTAAAATGTGTATAGAatgaacagtaccagtcaagttcgcacatacctactcattcaagggttcttaatttttactattttctactttgtagaataattgtgaagacatcaaaactatgaaatcatgtagtgaCTAAAAAAagttaaatctaaatatatttgagattcgttaaagtagccaccctttgccttgatgccaactcttggcattctctcaaccagtgccaacagtcctgaaggagtttccacatagccaataagtgctcagcatgcTTTTTCttcactgcggtccaactcatcccaaaccatctcaattgggttgaggtcgggtgactgtggaaaccaggtcatctgatgtagctctcattcttggtcaaaagCCCTTagagcttggaggtgtgttgggtcattgtcctgttgaaaaacaaatgaaagtcccactaagcccaaccagatgggatggcgtatcactgcagaatgctggttaagcgtgccttgaattccaaataaatcacagacagtgtcaccagcaaagcaccccccacaccataacaccacctccatgcttcatgttgggaaccacacatgcggagatcatccgttcaactactctgcgtctcacaaagacaagggacaaggcggttggaagcaaaaatgtcaaattcggactcagaccaaaggacagatgtccACCAGTctaaatgtccattgctcatatttCTTGGCCCACGCAATTCTTTTCTcctcattggtgtccttttgtagtggtttctaTGTAGCAATTCGACTATGAAGGCCGGATTCACACAGTTTGTGACTTTTTCTTATCATAaatcgcacacctcatgtagcctagcccataggcttATACAGTTttagtctgaagtttacatacaccttaggaaaatacatttaatctcattttctcacaattcctgacattgaatcctagtaaaaagtcccttattaggtcagttaggatcaccactttattttaagaatgtgagaaTTAATTAACATTTCTCTAttctatttcagcttttatttatttcaccacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcaggtagccttccacaagcttcctacaataatttgggtgaattttgtcccattcctcctgacagagctggtgtaactgagccaggtttgtaggcctccttgctcgcacacactttttcagttctgcccacaaatttctataggattgaggtcagggctttgtgatggctactccaataccttggctttgtccttaagccagtttgccacaactttggaagtatgcttggtgtcattgtccatttggaagacccatttacgaccaagcttgaacttcctgactgatgtcgcttcaatatatccacataattttccttccacatgatatcatctattttgtgaagtgccccagtcccccctgcagcaaagcatccccacaacatactGCCACCCCTGTActtcacggctgggatggtgttcttcggcttgcaagcatccccctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccagagagcatttctccaaaaagtatgacctTTGTcgccatgtgtagttgcaaaccgtagtctggcttttttaacggcggttttggagcagtggcttctcctggctgagcgacctttcaggttatgtcaacacaggacttgttttactgtggatatagatacttttgtgccggtttcctccagcatcttcacaaggtcctttgctgttgttctaggattgatttgcacaaaaacaaaaatgcatttcaagcaacttttttcaaatcagcaagagtcacatcatgcagccttacaatatATTAAAAACCATAACATAGTCAACGTTTTTTGTATTACAATGAAAGATACATTGATAaaaactctaaattaagcatataggaataTCCATATTCTTTGTTAAcctctcaacacagaatagccaaaTGTGCGCACTACCTCAAATCGTTTggaaaaatattcatattttattcagctttgttcaaaaTGTATTGTTCATATTATAAAATGCCAcaaaatcttgtctgctaaattaactagtgtagcccacagccatttggcatagccagatcaggaaaagtcagagtatgctattctgttctcctgaaatagactacattttcttcatatcatgcttctttagacctgtctaaaataaatcatacatttattgtgaaggtgtaagctattttacatggatttattagactttttaaaatatagatgttccaaaggtctgcatcaatGGCTTGTATGCgttgtgtggaagccaggagatgctaaatgtgtttatgttaattaaacggtcaattaccgtgagaccgacaaCTATTTGCGTGACAATCACTGGCTAACGAAATTTCgtgaccgtcacagccctagtcGAGACAGGCTACTTTTGGAAACTTTCTGAGTGGACATTTAGGCCCATAGAGAGAATCAGCGAACTGACACACGCACACCCCCATAAAAGCACCCATGAATCAAAACCACCAGTGTACTGTCAGACACAAGAGGAAATATTTATTCTTTCACTAAAACATAAAAGAAAACCTTGGCCTACGTTAGGCTTCCTGAGAGAAGGATGCCAGATAAAAGTATGAAGGCGACAGCTATGCCATAGTATGAAGATGAAATTGACCATCATTAAAATAGAAACAAATACACAGAACATGTCCATAGCCTATTTATCAGCTATGTTGATTATCAAGGgattggaaagatttttcaaatactgtgaggaactattatAATGGACTTCGTTGACTTACTGTGGGAAGTGAAGAAAATATGACTTAGAAGCCAGGCAGGGCACTTTCCTACTTTGACATTTGCGAGAAGCAGGCCAGGTACTTCTATGCGTGTTCAGGTGCATGCGCTCCATCAACATTAACAGGTCAGAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1979563 lncRNA upstream 2484 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 5393 32458292 ~ 32459809 (+) False G1728188
TU1979489 lncRNA upstream 108641 32354036 ~ 32356561 (+) True G1728132
TU1979486 lncRNA upstream 112292 32352626 ~ 32352910 (+) True G1728131
TU1979470 lncRNA upstream 135640 32329294 ~ 32329562 (+) True G1728115
TU1979543 lncRNA downstream 26110 32494610 ~ 32495559 (+) True G1728170
TU1979630 lncRNA downstream 176294 32644794 ~ 32645016 (+) True G1728252
TU1979637 lncRNA downstream 186889 32655389 ~ 32655594 (+) True G1728259
TU1979638 lncRNA downstream 187285 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 193549 32662049 ~ 32662256 (+) True G1728265
NM_001124321.1 mRNA upstream 7072 32456121 ~ 32458130 (+) True LOC100135983
XM_021577522.2 mRNA upstream 44637 32409872 ~ 32420565 (+) False LOC110500261
XM_021577521.2 mRNA upstream 44637 32409875 ~ 32420565 (+) True LOC110500261
XM_021577519.2 mRNA upstream 69295 32365524 ~ 32395907 (+) True LOC110500259
XM_021577518.2 mRNA upstream 73674 32365521 ~ 32391528 (+) False LOC110500259
XM_036957669.1 mRNA downstream 5481 32473981 ~ 32494341 (+) False LOC110500263
XM_036957670.1 mRNA downstream 5481 32473981 ~ 32494341 (+) False LOC110500263
XM_036957671.1 mRNA downstream 5481 32473981 ~ 32494341 (+) False LOC110500263
XM_036957672.1 mRNA downstream 5481 32473981 ~ 32494341 (+) False LOC110500263
XM_036957673.1 mRNA downstream 5481 32473981 ~ 32494341 (+) False LOC110500263
TU1979380 other upstream 302810 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 328506 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 330203 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 900608 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 956830 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 852953 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1241592 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2970789 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3572831 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3764622 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile