RNA id: TU1979637



Basic Information


Item Value
RNA id TU1979637
length 206
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1728259
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32655389 ~ 32655594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTATAAATACACGGgacaatggggaagatgggcaacacctggagtgGGGAAGAGAcattcacaaagacaggtgaaacagatgtgACAATTCCGTGTGACAGGGAATTCTCTTTTTCACCTCAGGCAACTCAGGCAAGCAATAAAAtcagttaaaaaaaacaacagatgaaacacacacacacacacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1979630 lncRNA upstream 10373 32644794 ~ 32645016 (+) True G1728252
TU1979543 lncRNA upstream 159830 32494610 ~ 32495559 (+) True G1728170
TU1979566 lncRNA upstream 186889 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 192671 32458292 ~ 32462718 (+) True G1728188
TU1979562 lncRNA upstream 195580 32458292 ~ 32459809 (+) False G1728188
TU1979638 lncRNA downstream 191 32655785 ~ 32655993 (+) True G1728260
TU1979643 lncRNA downstream 6455 32662049 ~ 32662256 (+) True G1728265
TU1979647 lncRNA downstream 12017 32667611 ~ 32667979 (+) True G1728269
TU1979949 lncRNA downstream 476967 33132561 ~ 33150958 (+) True G1728542
TU1980755 lncRNA downstream 592375 33247969 ~ 33253479 (+) True LOC110500282
XM_036957681.1 mRNA upstream 19153 32613167 ~ 32636236 (+) False LOC110500271
XM_021577567.2 mRNA downstream 38623 32694217 ~ 32756092 (+) True LOC110500277
XM_021577566.2 mRNA downstream 112401 32767995 ~ 32792331 (+) True LOC110500276
XM_021577571.2 mRNA downstream 137616 32793210 ~ 32834958 (+) True LOC110500278
XM_036957687.1 mRNA downstream 186195 32841789 ~ 32957803 (+) False LOC110500279
XM_036957688.1 mRNA downstream 186195 32841789 ~ 32957803 (+) False LOC110500279
TU1979380 other upstream 492997 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 518693 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 520390 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1090795 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1147017 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 665859 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1054498 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2783695 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3385737 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3577528 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile