RNA id: TU1979638



Basic Information


Item Value
RNA id TU1979638
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1728260
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32655785 ~ 32655993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATACATCAATATCTGTATTCTTTTGATTGAGATCCTTGATGTTTTCATTATATTATGAACCCTTATAAAACATGTCTATGTGATGCAATGCTTATAAGGTCTGCAGTGCACTTCAGAAACAGAGCTTGCTGTTTCAATAATACAACACATCCAGTGTAATAGTTCTCAGTCCATGGCAATTCTCAACTGGAATTGCCTGTATATTAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1979637 lncRNA upstream 191 32655389 ~ 32655594 (+) True G1728259
TU1979630 lncRNA upstream 10769 32644794 ~ 32645016 (+) True G1728252
TU1979543 lncRNA upstream 160226 32494610 ~ 32495559 (+) True G1728170
TU1979566 lncRNA upstream 187285 32465202 ~ 32468500 (+) True G1728191
TU1979563 lncRNA upstream 193067 32458292 ~ 32462718 (+) True G1728188
TU1979643 lncRNA downstream 6056 32662049 ~ 32662256 (+) True G1728265
TU1979647 lncRNA downstream 11618 32667611 ~ 32667979 (+) True G1728269
TU1979949 lncRNA downstream 476568 33132561 ~ 33150958 (+) True G1728542
TU1980755 lncRNA downstream 591976 33247969 ~ 33253479 (+) True LOC110500282
TU1980812 lncRNA downstream 608901 33264894 ~ 33265132 (+) True G1729333
XM_036957681.1 mRNA upstream 19549 32613167 ~ 32636236 (+) False LOC110500271
XM_021577567.2 mRNA downstream 38224 32694217 ~ 32756092 (+) True LOC110500277
XM_021577566.2 mRNA downstream 112002 32767995 ~ 32792331 (+) True LOC110500276
XM_021577571.2 mRNA downstream 137217 32793210 ~ 32834958 (+) True LOC110500278
XM_036957687.1 mRNA downstream 185796 32841789 ~ 32957803 (+) False LOC110500279
XM_036957688.1 mRNA downstream 185796 32841789 ~ 32957803 (+) False LOC110500279
TU1979380 other upstream 493393 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 519089 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 520786 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1091191 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1147413 31508056 ~ 31508372 (+) True G1727181
TU1980944 other downstream 665460 33321453 ~ 33321761 (+) True G1729465
TU1981477 other downstream 1054099 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2783296 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 3385338 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 3577129 36233122 ~ 36236265 (+) True LOC110500325

Expression Profile