RNA id: TU1980944



Basic Information


Item Value
RNA id TU1980944
length 309
RNA type TUCP
GC content 0.58
exon number 1
gene id G1729465
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33321453 ~ 33321761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctatgtgagaatgctgttcatcgactacagctcggcattcaacaccatagtaccctccaagctcgtcatcaagctcgagaccctgggtctcgaccctgccctgtgcaactgggtactggacttcctgacgggccgcccccaggtggtgagggtaggcaacaacatctccaccccgctgatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcacccaagactgcgtggccacgcacgcctccaactcaatcatcaagtttgcggacgacacaacagtggtag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1980941 lncRNA upstream 2407 33318824 ~ 33319046 (+) True G1729462
TU1980838 lncRNA upstream 11709 33309524 ~ 33309744 (+) True G1729359
TU1980831 lncRNA upstream 27506 33293708 ~ 33293947 (+) True G1729352
TU1980827 lncRNA upstream 36208 33284691 ~ 33285245 (+) True G1729348
TU1980823 lncRNA upstream 45186 33276047 ~ 33276267 (+) True G1729344
TU1981061 lncRNA downstream 152074 33473835 ~ 33474330 (+) True G1729577
TU1981103 lncRNA downstream 214116 33535877 ~ 33536136 (+) True G1729617
TU1981267 lncRNA downstream 218183 33539944 ~ 33540150 (+) True G1729769
TU1981279 lncRNA downstream 223717 33545478 ~ 33545693 (+) True G1729781
TU1981280 lncRNA downstream 224139 33545900 ~ 33546114 (+) True G1729782
XM_021577574.2 mRNA upstream 67930 33180674 ~ 33253523 (+) False LOC110500282
XM_021577575.2 mRNA upstream 67930 33180677 ~ 33253523 (+) False LOC110500282
XM_021577576.2 mRNA upstream 67930 33199553 ~ 33253523 (+) False LOC110500282
XM_021577577.2 mRNA upstream 67930 33199554 ~ 33253523 (+) False LOC110500282
XM_036957692.1 mRNA upstream 154762 33054060 ~ 33166691 (+) False LOC110501067
XM_021577578.2 mRNA downstream 8166 33329927 ~ 33515988 (+) True LOC110500284
XM_036957699.1 mRNA downstream 387700 33709461 ~ 33809717 (+) False LOC110500285
XM_021577581.2 mRNA downstream 387735 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA downstream 427798 33749559 ~ 33869016 (+) False LOC110500285
XM_021577585.2 mRNA downstream 987338 34309099 ~ 34317797 (+) False LOC110500288
TU1979380 other upstream 1159061 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1184757 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1186454 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1756859 31564135 ~ 31564594 (+) True G1727220
TU1978468 other upstream 1813081 31508056 ~ 31508372 (+) True G1727181
TU1981477 other downstream 388331 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 2117528 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2719570 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2911361 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 3435228 36756989 ~ 36758883 (+) False G1733187

Expression Profile