RNA id: TU1981267



Basic Information


Item Value
RNA id TU1981267
length 207
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1729769
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33539944 ~ 33540150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacatccggcttcttcacctggtaGAGACTGAGActagccacctggacagctgatcaaatcaaattgtattggtcacatacacatggttagcagatgttattgagagtgtagcgaaatgattatgcttctagatctgacagtgcagcaatatctaacaggtaatatctaacaagtccacaacaaaacctaatagctaacaaattcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1981103 lncRNA upstream 3808 33535877 ~ 33536136 (+) True G1729617
TU1981061 lncRNA upstream 65614 33473835 ~ 33474330 (+) True G1729577
TU1980941 lncRNA upstream 220898 33318824 ~ 33319046 (+) True G1729462
TU1980838 lncRNA upstream 230200 33309524 ~ 33309744 (+) True G1729359
TU1980831 lncRNA upstream 245997 33293708 ~ 33293947 (+) True G1729352
TU1981279 lncRNA downstream 5328 33545478 ~ 33545693 (+) True G1729781
TU1981280 lncRNA downstream 5750 33545900 ~ 33546114 (+) True G1729782
TU1981286 lncRNA downstream 12827 33552977 ~ 33553203 (+) True G1729788
TU1981287 lncRNA downstream 13074 33553224 ~ 33553486 (+) True G1729789
TU1981301 lncRNA downstream 23712 33563862 ~ 33564130 (+) True G1729803
XM_021577578.2 mRNA upstream 23956 33329927 ~ 33515988 (+) True LOC110500284
XM_021577574.2 mRNA upstream 286421 33180674 ~ 33253523 (+) False LOC110500282
XM_036957699.1 mRNA downstream 169311 33709461 ~ 33809717 (+) False LOC110500285
XM_021577581.2 mRNA downstream 169346 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA downstream 209409 33749559 ~ 33869016 (+) False LOC110500285
XM_021577585.2 mRNA downstream 768949 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 768965 34309115 ~ 34317797 (+) False LOC110500288
TU1980944 other upstream 218183 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1377552 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1403248 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1404945 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1975350 31564135 ~ 31564594 (+) True G1727220
TU1981477 other downstream 169942 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 1899139 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2501181 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2692972 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 3216839 36756989 ~ 36758883 (+) False G1733187

Expression Profile