RNA id: TU1981279



Basic Information


Item Value
RNA id TU1981279
length 216
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1729781
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33545478 ~ 33545693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTCTTGTGCCTCCTCAACATTTCCCATCACCTCTTCCCCAGTGGTGGGATTGCTCCCCTGGATGCCTAAACCTGGAATAGAATAGGAATTGTCCATCCAGGATGAACATTTTAATTTTGTGATTACCATACACATCCACCTTTACGTCACACACATTAAGAACAGTCAGTCCAGCATTCTACATGCGTGTACACATAGAACACCAAATACCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1981267 lncRNA upstream 5328 33539944 ~ 33540150 (+) True G1729769
TU1981103 lncRNA upstream 9342 33535877 ~ 33536136 (+) True G1729617
TU1981061 lncRNA upstream 71148 33473835 ~ 33474330 (+) True G1729577
TU1980941 lncRNA upstream 226432 33318824 ~ 33319046 (+) True G1729462
TU1980838 lncRNA upstream 235734 33309524 ~ 33309744 (+) True G1729359
TU1981280 lncRNA downstream 207 33545900 ~ 33546114 (+) True G1729782
TU1981286 lncRNA downstream 7284 33552977 ~ 33553203 (+) True G1729788
TU1981287 lncRNA downstream 7531 33553224 ~ 33553486 (+) True G1729789
TU1981301 lncRNA downstream 18169 33563862 ~ 33564130 (+) True G1729803
TU1981338 lncRNA downstream 63995 33609688 ~ 33609995 (+) True G1729837
XM_021577578.2 mRNA upstream 29490 33329927 ~ 33515988 (+) True LOC110500284
XM_021577574.2 mRNA upstream 291955 33180674 ~ 33253523 (+) False LOC110500282
XM_036957699.1 mRNA downstream 163768 33709461 ~ 33809717 (+) False LOC110500285
XM_021577581.2 mRNA downstream 163803 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA downstream 203866 33749559 ~ 33869016 (+) False LOC110500285
XM_021577585.2 mRNA downstream 763406 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 763422 34309115 ~ 34317797 (+) False LOC110500288
TU1980944 other upstream 223717 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1383086 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1408782 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1410479 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1980884 31564135 ~ 31564594 (+) True G1727220
TU1981477 other downstream 164399 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 1893596 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2495638 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2687429 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 3211296 36756989 ~ 36758883 (+) False G1733187

Expression Profile