RNA id: TU1981301



Basic Information


Item Value
RNA id TU1981301
length 269
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1729803
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33563862 ~ 33564130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtttaaaaatatatacttctgtgtactgattttaagaaaggcattgatgttcatggttaggtacacattggagcaacgatacgcaccgcatcgattatatgcaacgcaggacacgctagataatatcatcaaccatgtgtagttaactagtgattatggttgattgattgactgttttttataagataagtttaatgctagctagcaacttaccttggcttactgcattcgcgtagcaggcagtctcctcgtggagtgcaatgagagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1981287 lncRNA upstream 10376 33553224 ~ 33553486 (+) True G1729789
TU1981286 lncRNA upstream 10659 33552977 ~ 33553203 (+) True G1729788
TU1981280 lncRNA upstream 17748 33545900 ~ 33546114 (+) True G1729782
TU1981279 lncRNA upstream 18169 33545478 ~ 33545693 (+) True G1729781
TU1981267 lncRNA upstream 23712 33539944 ~ 33540150 (+) True G1729769
TU1981338 lncRNA downstream 45558 33609688 ~ 33609995 (+) True G1729837
TU1981366 lncRNA downstream 74121 33638251 ~ 33643212 (+) True G1729865
TU1981426 lncRNA downstream 94473 33658603 ~ 33658826 (+) True G1729923
TU1981476 lncRNA downstream 185912 33750042 ~ 33868977 (+) False LOC110500285
TU1981475 lncRNA downstream 290470 33854600 ~ 33868977 (+) True LOC110500285
XM_021577578.2 mRNA upstream 47874 33329927 ~ 33515988 (+) True LOC110500284
XM_021577574.2 mRNA upstream 310339 33180674 ~ 33253523 (+) False LOC110500282
XM_036957699.1 mRNA downstream 145331 33709461 ~ 33809717 (+) False LOC110500285
XM_021577581.2 mRNA downstream 145366 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA downstream 185429 33749559 ~ 33869016 (+) False LOC110500285
XM_021577585.2 mRNA downstream 744969 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 744985 34309115 ~ 34317797 (+) False LOC110500288
TU1980944 other upstream 242101 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1401470 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1427166 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1428863 32114736 ~ 32134999 (+) False LOC110501063
TU1978507 other upstream 1999268 31564135 ~ 31564594 (+) True G1727220
TU1981477 other downstream 145962 33710092 ~ 33868977 (+) False LOC110500285
TU1983724 other downstream 1875159 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2477201 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2668992 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 3192859 36756989 ~ 36758883 (+) False G1733187

Expression Profile