RNA id: TU1981852


Basic Information

Item Value
RNA id TU1981852
length 264
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1730325
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33924816 ~ 33925079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatcctataatgtgattttctggatttcttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaatgacagggcTCTCTcagctttttaagtgggagaacttgcacaattggtggctgactgaatacttttttgccccactgtacgtgtggggtacagagatgaggtagtcattaaaaaaaaaaatttgactccagaacttatttaggattgccataactaatggattgaatacttattgactcaagacatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1981823 lncRNA upstream 21931 33902647 ~ 33902885 (+) True G1730296
TU1981476 lncRNA upstream 55839 33750042 ~ 33868977 (+) False LOC110500285
TU1981475 lncRNA upstream 55839 33854600 ~ 33868977 (+) True LOC110500285
TU1981426 lncRNA upstream 265990 33658603 ~ 33658826 (+) True G1729923
TU1981366 lncRNA upstream 281604 33638251 ~ 33643212 (+) True G1729865
TU1981883 lncRNA downstream 25413 33950492 ~ 33950910 (+) True G1730354
TU1981922 lncRNA downstream 54275 33979354 ~ 33979570 (+) True G1730393
TU1981933 lncRNA downstream 61494 33986573 ~ 33986790 (+) True G1730404
TU1981938 lncRNA downstream 64206 33989285 ~ 33989485 (+) True G1730409
TU1981939 lncRNA downstream 65269 33990348 ~ 33990674 (+) True G1730410
XM_021577581.2 mRNA upstream 55800 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA upstream 55800 33749559 ~ 33869016 (+) False LOC110500285
XM_036957699.1 mRNA upstream 115099 33709461 ~ 33809717 (+) False LOC110500285
XM_021577578.2 mRNA upstream 408828 33329927 ~ 33515988 (+) True LOC110500284
XM_021577577.2 mRNA upstream 671293 33199554 ~ 33253523 (+) False LOC110500282
XM_021577585.2 mRNA downstream 384020 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 384036 34309115 ~ 34317797 (+) False LOC110500288
XM_021577584.2 mRNA downstream 385916 34310995 ~ 34317797 (+) False LOC110500288
XM_021577588.2 mRNA downstream 400131 34325210 ~ 34329578 (+) False LOC100135927
XM_036957701.1 mRNA downstream 400131 34325210 ~ 34329578 (+) False LOC100135927
TU1981477 other upstream 55839 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 603055 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1762424 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1788120 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1789817 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 1514210 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2116252 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2308043 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2831910 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 3323548 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile