RNA id: TU1981976


Basic Information

Item Value
RNA id TU1981976
length 2454
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1730442
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34013527 ~ 34018689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTTCACTCGGTGACCGTTCCTACGATCTAGGTAAATAAATCGTGCACGAGGGATCCCCTAAACTTGGGATCTCAGGGAGAACCACACTTCGGGAAACGTAGCAGATGGACCAACCTTTGATCTAAGAGGAagcgagccgagtggataccacatctcgaactgagttttttttaaagaaaaaggtGAGCGAACCACACACAGATTTGAAGTCGAGTTTTTTTTATTATGCCTGTTACGTATACTCTGAGCGTGAATTCCTTTGTAAGGAAGGCACCTTGGCGGCGTAAGCAGGGCCGAGTCAGAGGAGAGTAATCTGGGGGTTTTATGGACTCAAAAGATACTCTGCGCTGTCCGGTTGCCAGTGACCAAGAGCCTGTGTgagtcggaccgttctgtgtgagcggggcaggtttactctgtgtgagttggaccgttctgtgtgagcggggtagggttactctgtgtgagtcggaccgttctgtgtgagcggggtagggtttACTCTGTGTGGGCAAACCTTTTGATGTTCTGTGTGGACGTCAGAAAAGTTCTATGTGAAAAatctgaccaatcctgtgtggATGATCCTGAAAGTGTGTGAGTAACTAAGATTTCTTAAAttttatatggattctgtgaattATTTGAAATTATGATAAATGGTATGTGTGTATAAAGTAATGCTGAAAATGattagatacaatttaaaccacccattcgtagacgtacgtaggttttgagttgatatcttaaatggataatttgataaagatCAAGTTTTTAAGCACTATTAAAGTAATCTACAAAATCTGGGAAATTGAGCTCTAGAAACTGATTTAGAGTGTGTCCACTTTTGATTATCTTACCCTAACGATGTAACTATAAAACGCATATTGGATTATCTCCGTCTGGGTGAAACATTTGAAATCAAACTGCCCTTAAGGTCTGAACATGTTATATTTtttcttcccagtatgagagaAATTGCGGGATTTATTGAATAAACTGTTTTCCATAAAGTTAAATAGAATTCGAGGGATGCTCGATGTAATTTATAATGTTGTACAAAGCCTAAGGTTTTCCATCAAGCTAATTATCATTGCGTGATTAAAGTGATGtagtaaagtaattgaaatacgttGCATAAGTAAACATAATCTACTTTTACTGTTTCCTAGTCATTAGTGtcgatttttttatttgattgctAATATATTCATTTGGAATTTGAGAATCATAGCTGGAGCAATGTTTGTACTATTAAAATTGGGCTATTATACTTCTGGGAATTACCGATAGTGACGTGTTTTGATTTTACTTTtgagatggggagtataaaccaatttgaaagaatagtttcaatagaatgttttgatattctctgtgaaatatgtttagatatgtgtgttaagaataattggtaaaagtaatcatttatcatgtagttaatgaactgaactaaactgttgttctgatctgttctttcgAGGTTATCATGAAGGGTGACATCAGACGGTATCTTAATGCATGGAAGAGATCATTTGGACCGAATGGTGTGTGTacctcaaaaccccctctaactggctgaagaagagagacaaaggcatTGAAGGAGGCTTTCCAAACCACTTCTACCGAGAGAAAAGAACCAAGCCAGAAATTGGTGTACAGTCTCAGATCTAAGCTatcaactgcttttctttcatggtTCTCTCATACTGTGAGAATCCACTTGGAGTGATCATGGAGAAAGATCTGTTCTAACATTTTTCTTATGATGCTGGTATGTTGGTTgacgaatggacaagacataagtggtaaagatgagacattgaaattgggacattatcaaGGGCCGTCCACTTTGAACTGTAAAGCTATTTGAAGAAAAACGAAGATGCCAGAAGATGCCGTGCCTGAGAGGGGGGGGTTTAATCTAACTGTGCCATTAAAATTGTTTATACTTTTGTGGTATCAGATTGATTGAAGAGGTCTACACCATGTAAATtgtagtaatttagattaagaatgcattgagatactgatctgcattaaaatcatgattaaaaaagttaatagtagaattatgggataattatactgtatgtaaatctgctaatattgatgtgtgttaaattgagGTTTTTACTTTGAGTGATAAGACAAATTTGAATCACTGAGGAGTGCTAAATATTCTAAATATTGGTTTGATAAATAGTTGGGTTGTTACTTATGATTTGTAATATGAATGATTTCAATGACCTATTCTCTATTCCTGAGTATATTTCTGAGCATGAGTACTTAGAGGGATGTCTGTCCTATATGTTGTGAGGAGGCCTGTGTTTAGACACTGGTTCTCATGTAATTTAAAGAGCAGTTatatgttatgtttttatttttcctcaaatggattattctgtgttattaaaaCATGTGCAAGTTTGTCTTGTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1981968 lncRNA upstream 165 34012917 ~ 34013362 (+) True G1730439
TU1981955 lncRNA upstream 11172 34001880 ~ 34002355 (+) True G1730426
TU1981951 lncRNA upstream 13395 33999785 ~ 34000132 (+) True G1730422
TU1981939 lncRNA upstream 22853 33990348 ~ 33990674 (+) True G1730410
TU1981938 lncRNA upstream 24042 33989285 ~ 33989485 (+) True G1730409
TU1982029 lncRNA downstream 63485 34082174 ~ 34112788 (+) True G1730490
TU1982125 lncRNA downstream 100307 34118996 ~ 34119376 (+) True G1730581
TU1982196 lncRNA downstream 150605 34169294 ~ 34218724 (+) True G1730651
TU1982293 lncRNA downstream 278480 34297169 ~ 34297702 (+) True G1730744
TU1982291 lncRNA downstream 282979 34301668 ~ 34302513 (+) True G1730742
XM_021577581.2 mRNA upstream 144511 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA upstream 144511 33749559 ~ 33869016 (+) False LOC110500285
XM_036957699.1 mRNA upstream 203810 33709461 ~ 33809717 (+) False LOC110500285
XM_021577578.2 mRNA upstream 497539 33329927 ~ 33515988 (+) True LOC110500284
XM_021577577.2 mRNA upstream 760004 33199554 ~ 33253523 (+) False LOC110500282
XM_021577585.2 mRNA downstream 290410 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 290426 34309115 ~ 34317797 (+) False LOC110500288
XM_021577584.2 mRNA downstream 292306 34310995 ~ 34317797 (+) False LOC110500288
XM_021577588.2 mRNA downstream 306521 34325210 ~ 34329578 (+) False LOC100135927
XM_036957701.1 mRNA downstream 306521 34325210 ~ 34329578 (+) False LOC100135927
TU1981477 other upstream 144550 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 691766 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1851135 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1876831 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1878528 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 1420600 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 2022642 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2214433 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2738300 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 3229938 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile