RNA id: TU1982125



Basic Information


Item Value
RNA id TU1982125
length 381
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1730581
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34118996 ~ 34119376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ataaacatcacaattggtccttttttttcgattaattccgtccatgtatacccaaaatgtccatttataaagcaggATTGATCCGGGgaaaaaaacagctttccaaaacacaacgtcactacaaaacatttcaaaagttgcctatatactttgccaaaatatttcaaactacttttgtaatacaactttcggtatttttaaacgttaataatcgatcaaattgtagacggggcaaacTGTATTCAATAGAGAAAGTAAACAAAACATGCTCCTTTTTCCCTCTTGCGTAACTATCAAAagtgtaacgttgttccaggatgtgcCTCTTCTTCGTTTCACCAATgattaacttcaacccaattccaaagactggtgacatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982029 lncRNA upstream 6208 34082174 ~ 34112788 (+) True G1730490
TU1981976 lncRNA upstream 100307 34013527 ~ 34018689 (+) True G1730442
TU1981968 lncRNA upstream 105634 34012917 ~ 34013362 (+) True G1730439
TU1981955 lncRNA upstream 116641 34001880 ~ 34002355 (+) True G1730426
TU1981951 lncRNA upstream 118864 33999785 ~ 34000132 (+) True G1730422
TU1982196 lncRNA downstream 49918 34169294 ~ 34218724 (+) True G1730651
TU1982293 lncRNA downstream 177793 34297169 ~ 34297702 (+) True G1730744
TU1982291 lncRNA downstream 182292 34301668 ~ 34302513 (+) True G1730742
TU1982290 lncRNA downstream 185992 34305368 ~ 34306209 (+) True G1730741
TU1982279 lncRNA downstream 190209 34309585 ~ 34309961 (+) True LOC110500288
XM_021577581.2 mRNA upstream 249980 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA upstream 249980 33749559 ~ 33869016 (+) False LOC110500285
XM_036957699.1 mRNA upstream 309279 33709461 ~ 33809717 (+) False LOC110500285
XM_021577578.2 mRNA upstream 603008 33329927 ~ 33515988 (+) True LOC110500284
XM_021577577.2 mRNA upstream 865473 33199554 ~ 33253523 (+) False LOC110500282
XM_021577585.2 mRNA downstream 189723 34309099 ~ 34317797 (+) False LOC110500288
XM_036957700.1 mRNA downstream 189739 34309115 ~ 34317797 (+) False LOC110500288
XM_021577584.2 mRNA downstream 191619 34310995 ~ 34317797 (+) False LOC110500288
XM_021577588.2 mRNA downstream 205834 34325210 ~ 34329578 (+) False LOC100135927
XM_036957701.1 mRNA downstream 205834 34325210 ~ 34329578 (+) False LOC100135927
TU1981477 other upstream 250019 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 797235 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 1956604 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 1982300 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 1983997 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 1319913 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1921955 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 2113746 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2637613 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 3129251 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile