RNA id: TU1982295



Basic Information


Item Value
RNA id TU1982295
length 377
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1730746
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34310139 ~ 34310515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtattatatagagccattattgcatggaactcccttccatcttatattgctcaaatgaacagcaaacctggtttaaaaattaaaaaaacagctaaagcaacacctcacagcacaatgCCGCTTCCCTATTTTACCtagatattttgtgtgtatgtattgatatgtaggctgtgtgtgctgTTTTTAGATATGTTCTGTCCTTGAGCAGTTCTTGTCTATACATTTTCTGtaatatgtcatgtttcatgtggaccccaggaaaagtagctgctgctttcactacagctaattgggatcctaataaaataacaaaaataccTTTGAACCAGATGTTGCCTCCCGCGTGAGCATggcagatattatggaggaaacATGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982279 lncRNA upstream 178 34309585 ~ 34309961 (+) True LOC110500288
TU1982290 lncRNA upstream 3930 34305368 ~ 34306209 (+) True G1730741
TU1982291 lncRNA upstream 7626 34301668 ~ 34302513 (+) True G1730742
TU1982293 lncRNA upstream 12437 34297169 ~ 34297702 (+) True G1730744
TU1982196 lncRNA upstream 91415 34169294 ~ 34218724 (+) True G1730651
TU1982424 lncRNA downstream 69073 34379588 ~ 34379848 (+) True G1730861
TU1982429 lncRNA downstream 71678 34382193 ~ 34382447 (+) True G1730866
TU1982520 lncRNA downstream 194727 34505242 ~ 34558860 (+) True G1730956
TU1982558 lncRNA downstream 264733 34575248 ~ 34580030 (+) True G1730994
TU1982564 lncRNA downstream 272692 34583207 ~ 34583466 (+) True G1730999
XM_021577581.2 mRNA upstream 441123 33709496 ~ 33869016 (+) False LOC110500285
XM_036957698.1 mRNA upstream 441123 33749559 ~ 33869016 (+) False LOC110500285
XM_036957699.1 mRNA upstream 500422 33709461 ~ 33809717 (+) False LOC110500285
XM_021577578.2 mRNA upstream 794151 33329927 ~ 33515988 (+) True LOC110500284
XM_021577577.2 mRNA upstream 1056616 33199554 ~ 33253523 (+) False LOC110500282
XM_021577584.2 mRNA downstream 480 34310995 ~ 34317797 (+) False LOC110500288
XM_021577588.2 mRNA downstream 14695 34325210 ~ 34329578 (+) False LOC100135927
XM_036957701.1 mRNA downstream 14695 34325210 ~ 34329578 (+) False LOC100135927
XM_036957702.1 mRNA downstream 14695 34325210 ~ 34329578 (+) False LOC100135927
XR_005038582.1 mRNA downstream 14695 34325210 ~ 34329578 (+) False LOC100135927
TU1981477 other upstream 441162 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 988378 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2147747 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2173443 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2175140 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 1128774 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1730816 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1922607 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2446474 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2938112 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile