RNA id: TU1982520



Basic Information


Item Value
RNA id TU1982520
length 270
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1730956
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34505242 ~ 34558860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttccctttcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattttttcccgattttttcccgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982429 lncRNA upstream 122795 34382193 ~ 34382447 (+) True G1730866
TU1982424 lncRNA upstream 125394 34379588 ~ 34379848 (+) True G1730861
TU1982295 lncRNA upstream 194727 34310139 ~ 34310515 (+) True G1730746
TU1982279 lncRNA upstream 195281 34309585 ~ 34309961 (+) True LOC110500288
TU1982290 lncRNA upstream 199033 34305368 ~ 34306209 (+) True G1730741
TU1982558 lncRNA downstream 16388 34575248 ~ 34580030 (+) True G1730994
TU1982564 lncRNA downstream 24347 34583207 ~ 34583466 (+) True G1730999
TU1982568 lncRNA downstream 29654 34588514 ~ 34588730 (+) True G1731003
TU1982572 lncRNA downstream 34050 34592910 ~ 34593116 (+) True G1731007
TU1982575 lncRNA downstream 40843 34599703 ~ 34599903 (+) True G1731010
XM_036957701.1 mRNA upstream 175664 34325210 ~ 34329578 (+) False LOC100135927
XM_021577597.2 mRNA downstream 207860 34766720 ~ 34782583 (+) True LOC110500293
XR_005038436.1 mRNA downstream 225553 34784413 ~ 34792564 (+) True LOC118942784
XM_036956493.1 mRNA downstream 358832 34917692 ~ 34931171 (+) True LOC110501070
XM_021577598.2 mRNA downstream 470399 35029259 ~ 35033416 (+) True LOC110500295
XM_021577600.2 mRNA downstream 512510 35071370 ~ 35267800 (+) True LOC110500296
TU1981477 other upstream 636265 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1183481 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2342850 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2368546 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2370243 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 880429 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1482471 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1674262 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2198129 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2689767 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile