RNA id: TU1982558



Basic Information


Item Value
RNA id TU1982558
length 240
lncRNA type inter_gene
GC content 0.20
exon number 2
gene id G1730994
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34575248 ~ 34580030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaaaatctagaaaaaaatctagaaaaaaaatctagaaaaaaatctagaaaataaatctaaaaaaaaatctagaaaaaaatctagaaaataaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaatcaaAATCATTTTTTTCTCGGAAAAATCGGAaagaaatcggaaaaaaatcggaaaaaaaatcggaaaaaaatcgggaaaaaatcgggaaaaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982520 lncRNA upstream 16388 34505242 ~ 34558860 (+) True G1730956
TU1982429 lncRNA upstream 192801 34382193 ~ 34382447 (+) True G1730866
TU1982424 lncRNA upstream 195400 34379588 ~ 34379848 (+) True G1730861
TU1982295 lncRNA upstream 264733 34310139 ~ 34310515 (+) True G1730746
TU1982279 lncRNA upstream 265287 34309585 ~ 34309961 (+) True LOC110500288
TU1982564 lncRNA downstream 3177 34583207 ~ 34583466 (+) True G1730999
TU1982568 lncRNA downstream 8484 34588514 ~ 34588730 (+) True G1731003
TU1982572 lncRNA downstream 12880 34592910 ~ 34593116 (+) True G1731007
TU1982575 lncRNA downstream 19673 34599703 ~ 34599903 (+) True G1731010
TU1982580 lncRNA downstream 23851 34603881 ~ 34604819 (+) True G1731015
XM_036957701.1 mRNA upstream 245670 34325210 ~ 34329578 (+) False LOC100135927
XM_021577597.2 mRNA downstream 186690 34766720 ~ 34782583 (+) True LOC110500293
XR_005038436.1 mRNA downstream 204383 34784413 ~ 34792564 (+) True LOC118942784
XM_036956493.1 mRNA downstream 337662 34917692 ~ 34931171 (+) True LOC110501070
XM_021577598.2 mRNA downstream 449229 35029259 ~ 35033416 (+) True LOC110500295
XM_021577600.2 mRNA downstream 491340 35071370 ~ 35267800 (+) True LOC110500296
TU1981477 other upstream 706271 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1253487 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2412856 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2438552 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2440249 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 859259 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1461301 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1653092 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2176959 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2668597 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile