RNA id: TU1982575



Basic Information


Item Value
RNA id TU1982575
length 201
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1731010
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34599703 ~ 34599903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccctcacctcctccctgtagaatgtctcgtcattgttgctaatcaagcctaccactgttttgtcgtctgcaaatttgataattgagttggaggcgtgcatgcactcatgggtgaacaggcagtacaggagagggctgagaacgcatccATGTGGGGCcccattgttgaggatcagcggggtggagatttttactaccttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982572 lncRNA upstream 6587 34592910 ~ 34593116 (+) True G1731007
TU1982568 lncRNA upstream 10973 34588514 ~ 34588730 (+) True G1731003
TU1982564 lncRNA upstream 16237 34583207 ~ 34583466 (+) True G1730999
TU1982558 lncRNA upstream 19673 34575248 ~ 34580030 (+) True G1730994
TU1982520 lncRNA upstream 40843 34505242 ~ 34558860 (+) True G1730956
TU1982580 lncRNA downstream 3978 34603881 ~ 34604819 (+) True G1731015
TU1982583 lncRNA downstream 7061 34606964 ~ 34608157 (+) True G1731016
TU1982613 lncRNA downstream 54515 34654418 ~ 34654668 (+) True G1731044
TU1982614 lncRNA downstream 55952 34655855 ~ 34656197 (+) True G1731045
TU1982861 lncRNA downstream 156401 34756304 ~ 34756566 (+) True G1731245
XM_036957701.1 mRNA upstream 270125 34325210 ~ 34329578 (+) False LOC100135927
XM_021577597.2 mRNA downstream 166817 34766720 ~ 34782583 (+) True LOC110500293
XR_005038436.1 mRNA downstream 184510 34784413 ~ 34792564 (+) True LOC118942784
XM_036956493.1 mRNA downstream 317789 34917692 ~ 34931171 (+) True LOC110501070
XM_021577598.2 mRNA downstream 429356 35029259 ~ 35033416 (+) True LOC110500295
XM_021577600.2 mRNA downstream 471467 35071370 ~ 35267800 (+) True LOC110500296
TU1981477 other upstream 730726 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1277942 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2437311 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2463007 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2464704 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 839386 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1441428 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1633219 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2157086 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2648724 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile