RNA id: TU1982613



Basic Information


Item Value
RNA id TU1982613
length 251
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1731044
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34654418 ~ 34654668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attgcttgctgtttggggctttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaataaatgtgattagctagtagctagttagctggctagcttctgttgggggttccggttctaaagtatagaaaatagcagatccataccacattggttGAGGCGGGTTCCAGAAGAGTATGTTGAAACTGAGGTTAAAATATATACGAaggaaaatatacagtgccttgcga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982583 lncRNA upstream 46261 34606964 ~ 34608157 (+) True G1731016
TU1982580 lncRNA upstream 49599 34603881 ~ 34604819 (+) True G1731015
TU1982575 lncRNA upstream 54515 34599703 ~ 34599903 (+) True G1731010
TU1982572 lncRNA upstream 61302 34592910 ~ 34593116 (+) True G1731007
TU1982568 lncRNA upstream 65688 34588514 ~ 34588730 (+) True G1731003
TU1982614 lncRNA downstream 1187 34655855 ~ 34656197 (+) True G1731045
TU1982861 lncRNA downstream 101636 34756304 ~ 34756566 (+) True G1731245
TU1982866 lncRNA downstream 107468 34762136 ~ 34762399 (+) True G1731250
TU1982875 lncRNA downstream 119624 34774292 ~ 34774617 (+) True G1731259
TU1982979 lncRNA downstream 144908 34799576 ~ 34799946 (+) True G1731353
XM_036957701.1 mRNA upstream 324840 34325210 ~ 34329578 (+) False LOC100135927
XM_021577597.2 mRNA downstream 112052 34766720 ~ 34782583 (+) True LOC110500293
XR_005038436.1 mRNA downstream 129745 34784413 ~ 34792564 (+) True LOC118942784
XM_036956493.1 mRNA downstream 263024 34917692 ~ 34931171 (+) True LOC110501070
XM_021577598.2 mRNA downstream 374591 35029259 ~ 35033416 (+) True LOC110500295
XM_021577600.2 mRNA downstream 416702 35071370 ~ 35267800 (+) True LOC110500296
TU1981477 other upstream 785441 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1332657 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2492026 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2517722 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2519419 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 784621 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1386663 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1578454 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 2102321 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2593959 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile