RNA id: TU1982875



Basic Information


Item Value
RNA id TU1982875
length 326
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1731259
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34774292 ~ 34774617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgataaattatcagatggtcatgtagagatactggtgtgcaaaaaaagAGCagtaaagtaaataaatataaacagtatgggtggactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaggtCTCCAACTtgagcgatttttgcaattcgttccagtcacaggcagcagagaactggaacgaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgctggagcgcgtgctacgggtgggtgttgccatcgtgaccagtgaactgagataaggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1982866 lncRNA upstream 11893 34762136 ~ 34762399 (+) True G1731250
TU1982861 lncRNA upstream 17726 34756304 ~ 34756566 (+) True G1731245
TU1982614 lncRNA upstream 118095 34655855 ~ 34656197 (+) True G1731045
TU1982613 lncRNA upstream 119624 34654418 ~ 34654668 (+) True G1731044
TU1982583 lncRNA upstream 166135 34606964 ~ 34608157 (+) True G1731016
TU1982979 lncRNA downstream 24959 34799576 ~ 34799946 (+) True G1731353
TU1982999 lncRNA downstream 45377 34819994 ~ 34820259 (+) True G1731373
TU1983185 lncRNA downstream 191875 34966492 ~ 34966722 (+) True G1731545
TU1983243 lncRNA downstream 209232 34983849 ~ 34984050 (+) True G1731601
TU1983247 lncRNA downstream 214134 34988751 ~ 34989001 (+) True G1731605
XM_036957701.1 mRNA upstream 444714 34325210 ~ 34329578 (+) False LOC100135927
XR_005038436.1 mRNA downstream 9796 34784413 ~ 34792564 (+) True LOC118942784
XM_036956493.1 mRNA downstream 143075 34917692 ~ 34931171 (+) True LOC110501070
XM_021577598.2 mRNA downstream 254642 35029259 ~ 35033416 (+) True LOC110500295
XM_021577600.2 mRNA downstream 296753 35071370 ~ 35267800 (+) True LOC110500296
NM_001165066.2 mRNA downstream 729074 35503691 ~ 35510121 (+) False sh2d1ab
TU1981477 other upstream 905315 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 1452531 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 2611900 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 2637596 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 2639293 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 664672 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 1266714 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 1458505 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1982372 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 2474010 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile