RNA id: TU1983726


Basic Information

Item Value
RNA id TU1983726
length 290
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1732030
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35393921 ~ 35394210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaagaaatgatattcacatcaaaagttacagcagtttaagtaagagcaccaagatcattttctgtaacattttggcaaacagtgtccattttgaccaatacgtcaacaagttagacaaaaagtcagagtgtatgggatatttgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaacttccacaaacaacgttcgttttgaccactttcggaacgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1983725 lncRNA upstream 2038 35391594 ~ 35391883 (+) True G1732029
TU1983671 lncRNA upstream 85416 35307582 ~ 35308505 (+) True G1731980
TU1983666 lncRNA upstream 92318 35301084 ~ 35301603 (+) True G1731975
TU1983397 lncRNA upstream 98001 35295534 ~ 35295920 (+) True G1731749
TU1983396 lncRNA upstream 104386 35288851 ~ 35289535 (+) True G1731748
TU1983730 lncRNA downstream 8736 35402946 ~ 35403714 (+) True G1732034
TU1983734 lncRNA downstream 31001 35425211 ~ 35425999 (+) True G1732038
TU1983719 lncRNA downstream 46514 35440724 ~ 35442473 (+) False G1732024
TU1983720 lncRNA downstream 46514 35440724 ~ 35442473 (+) True G1732024
TU1983752 lncRNA downstream 109461 35503671 ~ 35510026 (+) True sh2d1ab
XM_021577600.2 mRNA upstream 126121 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 360505 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 462750 34917692 ~ 34931171 (+) True LOC110501070
XR_005038436.1 mRNA upstream 601357 34784413 ~ 34792564 (+) True LOC118942784
XM_021577597.2 mRNA upstream 611338 34766720 ~ 34782583 (+) True LOC110500293
NM_001165066.2 mRNA downstream 109481 35503691 ~ 35510121 (+) False sh2d1ab
XR_005038438.1 mRNA downstream 242377 35636587 ~ 35637138 (+) True LOC118942786
XM_021577628.2 mRNA downstream 394281 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 394282 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 394282 35788492 ~ 35982905 (+) True LOC110500322
TU1981477 other upstream 1524944 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2072160 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3231529 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3257225 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 3258922 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 45079 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 647121 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 838912 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1362779 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1854417 37248627 ~ 37252175 (+) False zgc:109889