RNA id: TCONS_00051028


Basic Information

Item Value
RNA id TCONS_00051028
length 554
RNA type processed_transcript
GC content 0.47
exon number 2
gene id XLOC_026113
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8933639 ~ 8934476 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggatcatggaggagagacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagagtgtgagagagaaacagccgtatcctgatcatccagacagatttgattatcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactgcaGTGGAGATGATtatggtgtgtgtatatcagtgtcatataagagcatcaggaggaagggaagagGTGATGAGTGTTGGTTTGGacgtaatgctcagtcctggagtttgatctgcttttcctccagtttctcattcatacacaatcacacacgcactgatctcccagtaaagccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagtgacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttgggctttatcctggatca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172094

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052434 lncRNA downstream 10843 8921127 ~ 8922796 (-) True XLOC_026112
TCONS_00052941 lncRNA downstream 205758 8719386 ~ 8727881 (-) True XLOC_026109
TCONS_00052940 lncRNA downstream 205808 8719386 ~ 8727831 (-) False XLOC_026109
TCONS_00052939 lncRNA downstream 370870 8561385 ~ 8562769 (-) True XLOC_026108
TCONS_00051023 lncRNA downstream 583596 8336731 ~ 8350043 (-) False XLOC_026106
TCONS_00051033 lncRNA upstream 541099 9475575 ~ 9476755 (-) True XLOC_026118
TCONS_00052942 lncRNA upstream 789340 9723816 ~ 9727798 (-) False XLOC_026123
TCONS_00052943 lncRNA upstream 790290 9724766 ~ 9727824 (-) True XLOC_026123
TCONS_00051041 lncRNA upstream 809979 9744455 ~ 9752851 (-) True XLOC_026125
TCONS_00051042 lncRNA upstream 819538 9754014 ~ 9761538 (-) True XLOC_026126
TCONS_00051027 mRNA downstream 59923 8873204 ~ 8873716 (-) True XLOC_026111
TCONS_00051026 mRNA downstream 168474 8758286 ~ 8765165 (-) True XLOC_026110
TCONS_00051024 mRNA downstream 391062 8362100 ~ 8542577 (-) True XLOC_026106
TCONS_00051025 mRNA downstream 423438 8506061 ~ 8510201 (-) True XLOC_026107
TCONS_00051019 mRNA downstream 533814 8323586 ~ 8399825 (-) False XLOC_026106
TCONS_00051031 mRNA upstream 497025 9431501 ~ 9444749 (-) True XLOC_026116
TCONS_00051032 mRNA upstream 523286 9457762 ~ 9458445 (-) True XLOC_026117
TCONS_00051034 mRNA upstream 550732 9485208 ~ 9488350 (-) True XLOC_026119
TCONS_00051035 mRNA upstream 561601 9496077 ~ 9496853 (-) True XLOC_026120
TCONS_00051036 mRNA upstream 607692 9542168 ~ 9569261 (-) False XLOC_026121
TCONS_00050944 other downstream 2705493 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00050943 other downstream 2705658 6221205 ~ 6227981 (-) False XLOC_026049
TCONS_00050934 other downstream 3235907 5697609 ~ 5697732 (-) True XLOC_026039
TCONS_00050921 other downstream 3607378 5326140 ~ 5326261 (-) True XLOC_026027
TCONS_00050895 other downstream 4476683 4444392 ~ 4456956 (-) False XLOC_026007
TCONS_00051029 other upstream 90009 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051030 other upstream 97143 9031619 ~ 9031767 (-) True XLOC_026115
TCONS_00051043 other upstream 979796 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051045 other upstream 1244715 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051046 other upstream 1252557 10187033 ~ 10187151 (-) True XLOC_026134

Expression Profile

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