RNA id: TU1983734



Basic Information


Item Value
RNA id TU1983734
length 789
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1732038
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35425211 ~ 35425999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtttggagaagaaatgatattcacatcaaaagttacagcagtttaagtaagagcaccaagatcattttctgtaacattttggcaaacagtgtccattttgaccaatacgtcaacaagttagacaaaaagtcagagtgtatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaacttccacaaacaacgttcgttttgaccactttcggaacgtttttgaggaaaaaagtccgacaagctaaaatcttcccctgcttctctgctcttcagagactaagtcggatttcaaatcggtgcaaccaatctgtaactatagccgttttcgtaacccatcgcctctctttcaagtgtctgtaaatcatgtcagcagcaaggcaattcattactttccaaaacaactatcgttttgaccactaaacaaaccgtttgacaaacatagtttggcttaaaatcttactccacttctctgcttctcaaagtcggaaacggtttttaaattgggtctaccgttctcgtgggagagcaatttaattaacccctcacctgctcttcactaacagctctctgtgtcaatactgatattccaaaacgataccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgttaagctagaaatgccgttccaatatcaacaattccgcaactgtcgcgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1983730 lncRNA upstream 21497 35402946 ~ 35403714 (+) True G1732034
TU1983726 lncRNA upstream 31001 35393921 ~ 35394210 (+) True G1732030
TU1983725 lncRNA upstream 33328 35391594 ~ 35391883 (+) True G1732029
TU1983671 lncRNA upstream 116706 35307582 ~ 35308505 (+) True G1731980
TU1983666 lncRNA upstream 123608 35301084 ~ 35301603 (+) True G1731975
TU1983719 lncRNA downstream 14725 35440724 ~ 35442473 (+) False G1732024
TU1983720 lncRNA downstream 14725 35440724 ~ 35442473 (+) True G1732024
TU1983752 lncRNA downstream 77672 35503671 ~ 35510026 (+) True sh2d1ab
TU1983767 lncRNA downstream 98467 35524466 ~ 35524815 (+) True G1732071
TU1983828 lncRNA downstream 109861 35535860 ~ 35536095 (+) True G1732129
XM_021577600.2 mRNA upstream 157411 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 391795 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 494040 34917692 ~ 34931171 (+) True LOC110501070
XR_005038436.1 mRNA upstream 632647 34784413 ~ 34792564 (+) True LOC118942784
XM_021577597.2 mRNA upstream 642628 34766720 ~ 34782583 (+) True LOC110500293
NM_001165066.2 mRNA downstream 77692 35503691 ~ 35510121 (+) False sh2d1ab
XR_005038438.1 mRNA downstream 210588 35636587 ~ 35637138 (+) True LOC118942786
XM_021577628.2 mRNA downstream 362492 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 362493 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 362493 35788492 ~ 35982905 (+) True LOC110500322
TU1981477 other upstream 1556234 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2103450 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3262819 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3288515 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 3290212 32114736 ~ 32134999 (+) False LOC110501063
TU1983724 other downstream 13290 35439289 ~ 35484354 (+) True G1732028
TU1984485 other downstream 615332 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 807123 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1330990 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1822628 37248627 ~ 37252175 (+) False zgc:109889

Expression Profile