RNA id: TU1983724


Basic Information

Item Value
RNA id TU1983724
length 2670
RNA type TUCP
GC content 0.47
exon number 2
gene id G1732028
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35439289 ~ 35484354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taagtatttggtcaataacaaaagtttatctcaatactttgttatataccctttgttggcaatgacagaggtcaaatgttttctgtaagtcttcacaaggtttccacacactgttgctggtattttggctcattcctccatgcagatctcatctagagcagtaatgttttggggctgttgctgggcaacacggactttcaactccctccaaagattgtctatggggttgagatctggagactggctaggccactccaggaccttaaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacatttcatcttcaatgcccttgctgatggaaagaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggaccctttgcagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtatggggttatttGAATGCAACTCAGCGTTCTTTGTCCTCCAACCACGAcgggttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctcccatatgaccattctcccaatcttcttctggatcatccaaatgctctctagcaaactttagatgggcctggacatgtactggcttaaacaggggaacatgtctggcactgcaggatttgtgtTCTTGGcgtcgtagtgtgttactgatggtagtctttgttactttggtcccagctctctgcaggtaattcactaggtccccccgtgtggttctgggatttttgctcaccgttcttgtgatcattttgaccccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaatacttgctccaacagttgatttcttcaaaccaagcttgcttacctattgcagattcagtcttcccagcctggtgcaggtctatcATTTTATTTCTGGtgtcttttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacagttgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtaaagaagaagttacaggtctgtgagagccagaaatattgcctgtttgtaggtgaccaaatacttattttccaccataatttgcaaataaattaatttaaaatcctacaacGTGATTCTCTCCTCGGGATTCCACCCACAGTAGAATGGGTAAACGGAGCGGGCCAACCAGGAGCTGGAAAAGTTCCTCCGCTGTTTCGTCTCCAGCCAGGCCAGCAACTGGAGAAAGTTCCTCGTCTGGGTGGAGTATGCTCACAACACACTGCGGAACTCATCCACTGGACTGTCACCATTCAAATGAGAGTTTGGGTTTGGACCCCCCCCGTTTCCATAACAAGAGGCTGAAACTGGGGTGCCATCAGCCAAGGCGTTCATTTGACGAGGTCGCAACACCTGGATCAGTGCGCAATCCTCCTTGCTCCGCTCCTCTGCCCGACACCAACACCAGGAAAACCAGCACCGAAGGCCTCATCGGCTCCTCCGACCGGGTCAATGGGTGTGGCTGTCCACCCATGATATTCCCTTAAAGGTGGACTTGCAGAAGCTCGCACCACGCTACATAGGATCATTCAAGATCCTGAGTCACATCAACCCGGTCCACTATTGTCTCAAGCTTCCCAGGTCTATGAGGGTCTGTCCATCCTTCCATGTCTCCCGTCTCAAGTTAGTATTGACCAGCCTACACTGTCCATCGTCTGTTGGATGCACGTTGGGTCTGAGGTACCCTGCGATGAATGTGGACTGTGAGGGCAAGGCACAGAGGAGCGGGCGTGGGAGGCTGCCCAGAATCTCCTGGATCCAGGACTCTTTTGGGACTTCAACCAACTGCTTGGTGGTCGCCCTGGCTCCGCGGCTGGGTCCGCTCCTAGAAGGGGTactgtcatggttccacctgtgaccagagggcggcagaggccgtcctagagacattaacgGCACTCAGGTGTGTCCAATTTACTCAAGATTTTTTGGTTAAAAGAagtgtgttttctgttgtcctttgcagaagcttgaataGTTTACCTTGTGCGTTTGTTTCCTGCGTGAGTTTGAGACTTAGTGATTTATTGTGTGACGTATTGTCTTATGGTACATTTAGTTGGAACGCCTATCCAGTTGTGGTATCTGGTTAACatgttgtgtggtattgtgttgtgttaaatTGTGTTGTGTAGCGGTACCTTTTGTTGGAAATCCTATCCAGTTGAAGTATCTGGTTAATTTTGTGTATGTGGTACCTTTAGTGGGAACTCCTATCCAGTTGAGGTATCTGGTCAACTTTTTGGAGATGTAGGTCTTCCCTCTAGCAGGCAGCCCCACCATCACAATCATGGTAGGAGAGTTAGTGAACTGAGGGACGGAcgctgaaaaacacacacacacagatggattaAAAACTGAcatggcacacacatacacatgtattGGAGTAATACAAAGatcaaagaacacacacacacatcagtttTAGACAAATGGATAGACCAcgtaacacacacgcacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1983734 lncRNA upstream 13290 35425211 ~ 35425999 (+) True G1732038
TU1983730 lncRNA upstream 35575 35402946 ~ 35403714 (+) True G1732034
TU1983726 lncRNA upstream 45079 35393921 ~ 35394210 (+) True G1732030
TU1983725 lncRNA upstream 47406 35391594 ~ 35391883 (+) True G1732029
TU1983671 lncRNA upstream 130784 35307582 ~ 35308505 (+) True G1731980
TU1983752 lncRNA downstream 19317 35503671 ~ 35510026 (+) True sh2d1ab
TU1983767 lncRNA downstream 40112 35524466 ~ 35524815 (+) True G1732071
TU1983828 lncRNA downstream 51506 35535860 ~ 35536095 (+) True G1732129
TU1983837 lncRNA downstream 56572 35540926 ~ 35541184 (+) True G1732137
TU1983841 lncRNA downstream 58644 35542998 ~ 35543217 (+) True G1732141
XM_021577600.2 mRNA upstream 171489 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 405873 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 508118 34917692 ~ 34931171 (+) True LOC110501070
XR_005038436.1 mRNA upstream 646725 34784413 ~ 34792564 (+) True LOC118942784
XM_021577597.2 mRNA upstream 656706 34766720 ~ 34782583 (+) True LOC110500293
NM_001165066.2 mRNA downstream 19337 35503691 ~ 35510121 (+) False sh2d1ab
XR_005038438.1 mRNA downstream 152233 35636587 ~ 35637138 (+) True LOC118942786
XM_021577628.2 mRNA downstream 304137 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 304138 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 304138 35788492 ~ 35982905 (+) True LOC110500322
TU1981477 other upstream 1570312 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2117528 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3276897 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3302593 32135955 ~ 32136696 (+) False LOC110501063
TU1979347 other upstream 3304290 32114736 ~ 32134999 (+) False LOC110501063
TU1984485 other downstream 556977 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 748768 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1272635 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1764273 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1886603 37370957 ~ 37371667 (+) True G1734420

Expression Profile