RNA id: TU1983841



Basic Information


Item Value
RNA id TU1983841
length 220
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1732141
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35542998 ~ 35543217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgcactgtgatagtctcagaggtccgtcaaaagcgcagagagcatcatgaagaacaaggaacgcaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1983837 lncRNA upstream 1814 35540926 ~ 35541184 (+) True G1732137
TU1983828 lncRNA upstream 6903 35535860 ~ 35536095 (+) True G1732129
TU1983767 lncRNA upstream 18183 35524466 ~ 35524815 (+) True G1732071
TU1983752 lncRNA upstream 32972 35503671 ~ 35510026 (+) True sh2d1ab
TU1983719 lncRNA upstream 100525 35440724 ~ 35442473 (+) False G1732024
TU1983843 lncRNA downstream 796 35544013 ~ 35544259 (+) True G1732143
TU1983868 lncRNA downstream 14262 35557479 ~ 35557711 (+) True G1732168
TU1983907 lncRNA downstream 35832 35579049 ~ 35579489 (+) True G1732201
TU1983911 lncRNA downstream 39234 35582451 ~ 35582665 (+) True G1732205
TU1983913 lncRNA downstream 40757 35583974 ~ 35584200 (+) True G1732207
NM_001165066.2 mRNA upstream 32877 35503691 ~ 35510121 (+) False sh2d1ab
XM_021577600.2 mRNA upstream 275198 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 509582 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 611827 34917692 ~ 34931171 (+) True LOC110501070
XR_005038436.1 mRNA upstream 750434 34784413 ~ 34792564 (+) True LOC118942784
XR_005038438.1 mRNA downstream 93370 35636587 ~ 35637138 (+) True LOC118942786
XM_021577628.2 mRNA downstream 245274 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 245275 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 245275 35788492 ~ 35982905 (+) True LOC110500322
XM_021577629.2 mRNA downstream 456604 35999821 ~ 36039069 (+) True sepsecs
TU1983724 other upstream 58644 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 1674021 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2221237 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3380606 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3406302 32135955 ~ 32136696 (+) False LOC110501063
TU1984485 other downstream 498114 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 689905 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1213772 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1705410 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1827740 37370957 ~ 37371667 (+) True G1734420

Expression Profile