RNA id: TCONS_00051030



Basic Information


Item Value
RNA id TCONS_00051030
length 149
RNA type snRNA
GC content 0.54
exon number 1
gene id XLOC_026115
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9031619 ~ 9031767 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGACAATCGCGGCTTCTCGTTGGACGAGAGTCTACAGTCTACAGTTACCATTGCACGTTCCCTGGGCAGATGTCTGCGAACttcccaaatgtgggaatctcgactgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171549

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052434 lncRNA downstream 108823 8921127 ~ 8922796 (-) True XLOC_026112
TCONS_00052941 lncRNA downstream 303738 8719386 ~ 8727881 (-) True XLOC_026109
TCONS_00052940 lncRNA downstream 303788 8719386 ~ 8727831 (-) False XLOC_026109
TCONS_00052939 lncRNA downstream 468850 8561385 ~ 8562769 (-) True XLOC_026108
TCONS_00051023 lncRNA downstream 681576 8336731 ~ 8350043 (-) False XLOC_026106
TCONS_00051033 lncRNA upstream 443808 9475575 ~ 9476755 (-) True XLOC_026118
TCONS_00052942 lncRNA upstream 692049 9723816 ~ 9727798 (-) False XLOC_026123
TCONS_00052943 lncRNA upstream 692999 9724766 ~ 9727824 (-) True XLOC_026123
TCONS_00051041 lncRNA upstream 712688 9744455 ~ 9752851 (-) True XLOC_026125
TCONS_00051042 lncRNA upstream 722247 9754014 ~ 9761538 (-) True XLOC_026126
TCONS_00051027 mRNA downstream 157903 8873204 ~ 8873716 (-) True XLOC_026111
TCONS_00051026 mRNA downstream 266454 8758286 ~ 8765165 (-) True XLOC_026110
TCONS_00051024 mRNA downstream 489042 8362100 ~ 8542577 (-) True XLOC_026106
TCONS_00051025 mRNA downstream 521418 8506061 ~ 8510201 (-) True XLOC_026107
TCONS_00051021 mRNA downstream 631845 8334329 ~ 8399774 (-) False XLOC_026106
TCONS_00051031 mRNA upstream 399734 9431501 ~ 9444749 (-) True XLOC_026116
TCONS_00051032 mRNA upstream 425995 9457762 ~ 9458445 (-) True XLOC_026117
TCONS_00051034 mRNA upstream 453441 9485208 ~ 9488350 (-) True XLOC_026119
TCONS_00051035 mRNA upstream 464310 9496077 ~ 9496853 (-) True XLOC_026120
TCONS_00051036 mRNA upstream 510401 9542168 ~ 9569261 (-) False XLOC_026121
TCONS_00051029 other downstream 7067 9024485 ~ 9024552 (-) True XLOC_026114
TCONS_00051028 other downstream 97143 8933639 ~ 8934476 (-) True XLOC_026113
TCONS_00050944 other downstream 2803473 6225542 ~ 6228146 (-) True XLOC_026049
TCONS_00050943 other downstream 2803638 6221205 ~ 6227981 (-) False XLOC_026049
TCONS_00050934 other downstream 3333887 5697609 ~ 5697732 (-) True XLOC_026039
TCONS_00051043 other upstream 882505 9914272 ~ 9914389 (-) True XLOC_026128
TCONS_00051045 other upstream 1147424 10179191 ~ 10186353 (-) True XLOC_026133
TCONS_00051046 other upstream 1155266 10187033 ~ 10187151 (-) True XLOC_026134
TCONS_00051047 other upstream 1181331 10213098 ~ 10213220 (-) True XLOC_026135
TCONS_00051051 other upstream 1504707 10536474 ~ 10548477 (-) False XLOC_026140