RNA id: TU1983960



Basic Information


Item Value
RNA id TU1983960
length 232
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1732250
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35621220 ~ 35621451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAGAATGTgtatcaaaacaaacaatacctcacaaatggggtgcaaagaactgaacacAATATTGTGTAAATTATCAGATTGGGATCttgagagtgagctgcgttcaggggatctatgtgtttgagagagtgagctggaaagtgggctggaaagtgagctgtgtttaggggatctatgtgttcaagagtgtgagttggaagcagatgtTACCACTGTAGCACGATATAAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1983955 lncRNA upstream 6613 35614403 ~ 35614607 (+) True G1732248
TU1983953 lncRNA upstream 7795 35613087 ~ 35613425 (+) True G1732246
TU1983948 lncRNA upstream 16180 35604821 ~ 35605040 (+) True G1732241
TU1983913 lncRNA upstream 37020 35583974 ~ 35584200 (+) True G1732207
TU1983911 lncRNA upstream 38555 35582451 ~ 35582665 (+) True G1732205
TU1984029 lncRNA downstream 41141 35662592 ~ 35662851 (+) True G1732307
TU1984030 lncRNA downstream 42103 35663554 ~ 35663953 (+) True G1732308
TU1984031 lncRNA downstream 43944 35665395 ~ 35665595 (+) True G1732309
TU1984039 lncRNA downstream 49346 35670797 ~ 35672386 (+) True G1732317
TU1984042 lncRNA downstream 51724 35673175 ~ 35673657 (+) True G1732319
NM_001165066.2 mRNA upstream 111099 35503691 ~ 35510121 (+) False sh2d1ab
XM_021577600.2 mRNA upstream 353420 35071370 ~ 35267800 (+) True LOC110500296
XM_021577598.2 mRNA upstream 587804 35029259 ~ 35033416 (+) True LOC110500295
XM_036956493.1 mRNA upstream 690049 34917692 ~ 34931171 (+) True LOC110501070
XR_005038436.1 mRNA upstream 828656 34784413 ~ 34792564 (+) True LOC118942784
XR_005038438.1 mRNA downstream 15136 35636587 ~ 35637138 (+) True LOC118942786
XM_021577628.2 mRNA downstream 167040 35788491 ~ 35982905 (+) False LOC110500322
XM_021577626.2 mRNA downstream 167041 35788492 ~ 35982905 (+) False LOC110500322
XM_021577627.2 mRNA downstream 167041 35788492 ~ 35982905 (+) True LOC110500322
XM_021577629.2 mRNA downstream 378370 35999821 ~ 36039069 (+) True sepsecs
TU1983724 other upstream 136866 35439289 ~ 35484354 (+) True G1732028
TU1981477 other upstream 1752243 33710092 ~ 33868977 (+) False LOC110500285
TU1980944 other upstream 2299459 33321453 ~ 33321761 (+) True G1729465
TU1979380 other upstream 3458828 32157912 ~ 32162392 (+) True LOC110500252
TU1979348 other upstream 3484524 32135955 ~ 32136696 (+) False LOC110501063
TU1984485 other downstream 419880 36041331 ~ 36042488 (+) True G1732735
TU1984576 other downstream 611671 36233122 ~ 36236265 (+) True LOC110500325
TU1984969 other downstream 1135538 36756989 ~ 36758883 (+) False G1733187
TU1986149 other downstream 1627176 37248627 ~ 37252175 (+) False zgc:109889
TU1986313 other downstream 1749506 37370957 ~ 37371667 (+) True G1734420

Expression Profile